Evidence map›Paper›PMID 22406746›Full record

ArticleNature medicine2012

A systems approach identifies HIPK2 as a key regulator of kidney fibrosis.

Yuanmeng Jin, Krishna Ratnam, Peter Y Chuang, Ying Fan, Yifei Zhong, Yan Dai, Amin R Mazloom, Edward Y Chen, Vivette D'Agati, Huabao Xiong and 4 more

Erratum issuedAbstract read
In one paragraph

Article in Nature medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 156 citations in OpenAlex.

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  10. 1,25(OH)Endocrine · 2024
    Article
  11. Article
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  13. Small Molecule Allosteric Inhibitor of HIPK2 as a Novel Therapy against Kidney Fibrosis.Journal of the American Society of Nephrology : JASN · 2024
    Article
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Yuanmeng JinDivision of Nephrology, Department of Medicine, Mount Sinai School of Medicine, New York, New York, USA.
Krishna Ratnam
Peter Y Chuang
Ying Fan
Yifei Zhong
Yan Dai
Amin R Mazloom
Edward Y Chen
Vivette D'Agati
Huabao Xiong
Michael J Ross
Nan Chen
Avi Ma'ayan
John Cijiang He
Icahn School of Medicine at Mount Sinai · USPartnership Schools · USColumbia University · USJames J. Peters VA Medical Center · USRuijin Hospital · CN

Funding

VIRAL PATHOGENESIS OF HIV ASSOCIATED NEPHROPATHYP01DK056492 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI KLOTMAN, PAUL EVAN · 1999 to 2021
$27.8M
System Biology Center in New YorkP50GM071558 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ZAPH, SUSANA NEVES · 2007 to 2017
$22.8M
Role of HIPK2 in Kidney Tubulointerstitial InjuryR01DK088541 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HE, JOHN CIJIANG · 2010 to 2019
$4.0M
Cellular and molecular mechanisms of retinoids in podocytesR01DK078897 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HE, JOHN CIJIANG · 2007 to 2018
$3.6M
RNA profiling of HIV-associated nephropathy in patients with the MYH9 risk alleleRC4DK090860 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI KLOTMAN, PAUL EVAN · 2010 to 2010
$1.9M
The role of FAT10 in the pathogenesis of HIV-associated nephropathyR01DK078510 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ROSS, MICHAEL J · 2007 to 2011
$1.8M
The role of SIRT1/FOXO4 pathway in podocyte apoptosis of diabetes mellitusK08DK082760 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHUANG, PETER YENLUNG · 2009 to 2013
$746k
Pathogenesis of HIVAN: the role of NefK08DK065495 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI HE, JOHN C · 2003 to 2007
$640k
NIDDK NIH HHS 1R01DK078897NIDDK NIH HHS 1R01DK088541NIDDK NIH HHS 1RC4DK090860NIDDK NIH HHS 5K08DK082760NIDDK NIH HHS K08 DK065495NIDDK NIH HHS K08 DK082760NIDDK NIH HHS P01 DK056492NIDDK NIH HHS P01-DK-56492NIDDK NIH HHS R01 DK078510NIDDK NIH HHS R01 DK078897NIDDK NIH HHS R01 DK088541NIDDK NIH HHS RC4 DK090860NIGMS NIH HHS 5P50GM071558NIGMS NIH HHS P50 GM071558NIH HHS RC2OD006536
6 · The paper itself

Abstract

Kidney fibrosis is a common process that leads to the progression of various types of kidney disease. We used an integrated computational and experimental systems biology approach to identify protein kinases that regulate gene expression changes in the kidneys of human immunodeficiency virus (HIV) transgenic mice (Tg26 mice), which have both tubulointerstitial fibrosis and glomerulosclerosis. We identified homeo-domain interacting protein kinase 2 (HIPK2) as a key regulator of kidney fibrosis. HIPK2 was upregulated in the kidneys of Tg26 mice and in those of patients with various kidney diseases. HIV infection increased the protein concentrations of HIPK2 by promoting oxidative stress, which inhibited the seven in absentia homolog 1 (SIAH1)-mediated proteasomal degradation of HIPK2. HIPK2 induced apoptosis and the expression of epithelial-to-mesenchymal transition markers in kidney epithelial cells by activating the p53, transforming growth factor β (TGF-β)-SMAD family member 3 (Smad3) and Wnt-Notch pathways. Knockout of HIPK2 improved renal function and attenuated proteinuria and kidney fibrosis in Tg26 mice, as well as in other murine models of kidney fibrosis. We therefore conclude that HIPK2 is a potential target for anti-fibrosis therapy.

Indexed as

Analysis of VarianceAnimalsApoptosisCarrier ProteinsCell DifferentiationCells, CulturedCreatinineDisease Models, AnimalEpithelial-Mesenchymal TransitionFibrosisGene Expression ProfilingGlutathioneGlutathione DisulfideHIVHIV InfectionsHumansCarrier ProteinsCreatinineGlutathioneGlutathione DisulfideHipk2 protein, mouseHydroxyprolineNF-kappa BNuclear ProteinsProtein Serine-Threonine KinasesRNA, Small InterferingSeven in Absentia ProteinsSmad3 ProteinTransforming Growth Factor beta1Tumor Suppressor Protein p53Ubiquitin-Protein Ligases

Identifiers

PMID22406746
PMCPMC3321097
OpenAlexW2044183928

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.