Evidence map›Paper›PMID 22405012›Full record

ArticleStructure (London, England : 1993)2012

Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopy.

Jingchuan Sun, Hironori Kawakami, Juergen Zech, Christian Speck, Bruce Stillman, Huilin Li

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Article
  3. Four decades of Eukaryotic DNA replication: From yeast genetics to high-resolution cryo-EM structures of the replisome.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  5. Article
  6. Review
  7. Review
  8. Article
  9. Pax3 inhibits Neuro-2a cells proliferation and neurite outgrowth.Journal of cellular and molecular medicine · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Conformational control and DNA-binding mechanism of the metazoan origin recognition complex.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Review
  17. Article
  18. Review
  19. Mechanisms and regulation of DNA replication initiation in eukaryotes.Critical reviews in biochemistry and molecular biology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Jingchuan SunBiology Department, Brookhaven National Laboratory, Upton, NY 11973, USA.
Hironori Kawakami
Juergen Zech
Christian Speck
Bruce Stillman
Huilin Li
Cold Spring Harbor Laboratory · USHammersmith Hospital · GBBrookhaven National Laboratory · USStony Brook University · US

Funding

REGULATION OF DNA REPLICATIONR01GM045436 · NIGMS · COLD SPRING HARBOR LABORATORY · PI STILLMAN, BRUCE W. · 1991 to 2025
$15.8M
Structural mechanism of DNA replicationR35GM131754 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI Huilin Li · 2019 to 2026
$6.0M
The Structural Basis of Eukaryotic Replication Origin Licensing by Cryo-EMR01GM074985 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI LI, HUILIN · 2006 to 2010
$1.7M
CCD Camera for Cryo-EMS10RR025415 · NCRR · STATE UNIVERSITY NEW YORK STONY BROOK · PI LI, HUILIN · 2009 to 2009
$244k
Medical Research Council MC_U120085811NCRR NIH HHS S10 RR025415NIGMS NIH HHS GM45436NIGMS NIH HHS GM74985NIGMS NIH HHS R01 GM045436NIGMS NIH HHS R01 GM074985NIGMS NIH HHS R35 GM131754
6 · The paper itself

Abstract

The eukaryotic origin recognition complex (ORC) interacts with and remodels origins of DNA replication prior to initiation in S phase. Here, we report a single-particle cryo-EM-derived structure of the supramolecular assembly comprising Saccharomyces cerevisiae ORC, the replication initiation factor Cdc6, and double-stranded ARS1 origin DNA in the presence of ATPγS. The six subunits of ORC are arranged as Orc1:Orc4:Orc5:Orc2:Orc3, with Orc6 binding to Orc2. Cdc6 binding changes the conformation of ORC, in particular reorienting the Orc1 N-terminal BAH domain. Segmentation of the 3D map of ORC-Cdc6 on DNA and docking with the crystal structure of the homologous archaeal Orc1/Cdc6 protein suggest an origin DNA binding model in which the DNA tracks along the interior surface of the crescent-like ORC. Thus, ORC bends and wraps the DNA. This model is consistent with the observation that binding of a single Cdc6 extends the ORC footprint on origin DNA from both ends.

Indexed as

Models, MolecularProtein ConformationCell Cycle ProteinsCryoelectron MicroscopyDNA-Binding ProteinsOrigin Recognition ComplexProtein SubunitsSaccharomyces cerevisiae ProteinsTranscription FactorsABFI protein, S cerevisiaeCDC6 protein, S cerevisiaeCell Cycle ProteinsDNA-Binding ProteinsORC1 protein, S cerevisiaeOrigin Recognition ComplexProtein SubunitsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID22405012
PMCPMC3299985
OpenAlexW1987945388

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.