Evidence map›Paper›PMID 22405009›Full record

ArticleStructure (London, England : 1993)2012

Structural dynamics associated with intermediate formation in an archetypal conformational disease.

Mun Peak Nyon, Lakshmi Segu, Lisa D Cabrita, Géraldine R Lévy, John Kirkpatrick, Benoit D Roussel, Anathe O M Patschull, Tracey E Barrett, Ugo I Ekeowa, Richard Kerr and 7 more

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The structural basis for Z αScience advances · 2020
    Article
  5. Article
  6. Article
  7. New Therapeutic Targets for Alpha-1 Antitrypsin Deficiency.Chronic obstructive pulmonary diseases (Miami, Fla.) · 2018
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Mun Peak NyonInstitute of Structural and Molecular Biology, Department of Biological Sciences, Birkbeck College, London, WC1E 7HX, UK.
Lakshmi Segu
Lisa D Cabrita
Géraldine R Lévy
John Kirkpatrick
Benoit D Roussel
Anathe O M Patschull
Tracey E Barrett
Ugo I Ekeowa
Richard Kerr
Christopher A Waudby
Noor Kalsheker
Marian Hill
Konstantinos Thalassinos
David A Lomas
John Christodoulou
Bibek Gooptu

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council G0700990Medical Research Council G0701236Medical Research Council G0901786Medical Research Council MC_G1000734Medical Research Council MC_U117533887Wellcome Trust 089703Wellcome Trust 097806
6 · The paper itself

Abstract

In conformational diseases, native protein conformers convert to pathological intermediates that polymerize. Structural characterization of these key intermediates is challenging. They are unstable and minimally populated in dynamic equilibria that may be perturbed by many analytical techniques. We have characterized a forme fruste deficiency variant of α(1)-antitrypsin (Lys154Asn) that forms polymers recapitulating the conformer-specific neo-epitope observed in polymers that form in vivo. Lys154Asn α(1)-antitrypsin populates an intermediate ensemble along the polymerization pathway at physiological temperatures. Nuclear magnetic resonance spectroscopy was used to report the structural and dynamic changes associated with this. Our data highlight an interaction network likely to regulate conformational change and do not support the recent contention that the disease-relevant intermediate is substantially unfolded. Conformational disease intermediates may best be defined using powerful but minimally perturbing techniques, mild disease mutants, and physiological conditions.

Indexed as

Models, MolecularProtein Conformationalpha 1-AntitrypsinEpitopesHumansNuclear Magnetic Resonance, BiomolecularPolymerizationProteostasis Deficienciesalpha 1-AntitrypsinEpitopes

Identifiers

PMID22405009
PMCPMC3314904

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.