Evidence map›Paper›PMID 22403676›Full record

ArticlePloS one2012

Use of sensitive, broad-spectrum molecular assays and human airway epithelium cultures for detection of respiratory pathogens.

Krzysztof Pyrc, Karol Stożek, Krzysztof Wojcik, Katarzyna Gawron, Slawomir Zeglen, Wojciech Karolak, Jacek Wojarski, Marek Ochman, Magdalena Hubalewska-Mazgaj, Grazyna Bochenek and 4 more

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Visualizing Coronavirus Entry into Cells.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  3. Novel Polyanions Inhibiting Replication of Influenza Viruses.Antimicrobial agents and chemotherapy · 2016
    Article
  4. Article
  5. HexaPrime: a novel method for detection of coronaviruses.Journal of virological methods · 2013
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Krzysztof PyrcMicrobiology Department, Faculty of Biochemistry Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland. k.a.pyrc@uj.edu.pl
Karol Stożek
Krzysztof Wojcik
Katarzyna Gawron
Slawomir Zeglen
Wojciech Karolak
Jacek Wojarski
Marek Ochman
Magdalena Hubalewska-Mazgaj
Grazyna Bochenek
Marek Sanak
Marian Zembala
Andrzej Szczeklik
Jan Potempa

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rapid and accurate detection and identification of viruses causing respiratory tract infections is important for patient care and disease control. Despite the fact that several assays are available, identification of an etiological agent is not possible in ~30% of patients suffering from respiratory tract diseases. Therefore, the aim of the current study was to develop a diagnostic set for the detection of respiratory viruses with sensitivity as low as 1-10 copies per reaction. Evaluation of the assay using a training clinical sample set showed that viral nucleic acids were identified in ~76% of cases. To improve assay performance and facilitate the identification of novel species or emerging strains, cultures of fully differentiated human airway epithelium were used to pre-amplify infectious viruses. This additional step resulted in the detection of pathogens in all samples tested. Based on these results it can be hypothesized that the lack of an etiological agent in some clinical samples, both reported previously and observed in the present study, may result not only from the presence of unknown viral species, but also from imperfections in the detection methods used.

Indexed as

Cell Culture TechniquesCulture Media, ConditionedDNA PrimersEpitheliumHumansPolymerase Chain ReactionRespiratory SystemVirusesCulture Media, ConditionedDNA Primers

Identifiers

PMID22403676
PMCPMC3293820

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.