Evidence map›Paper›PMID 22401293›Full record

ArticleBiochemistry2012

Linking energy production and protein synthesis in hydrogenotrophic methanogens.

Javin P Oza, Kevin R Sowers, John J Perona

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Aminoacyl-tRNA synthetase complexes in evolution.International journal of molecular sciences · 2015
    Review
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Javin P OzaInterdepartmental Program in Biomolecular Science and Engineering, University of California, Santa Barbara, Santa Barbara, California 93106-9510, United States.
Kevin R Sowers
John J Perona
University of Maryland, Baltimore County · US

Funding

Specificity in the Synthesis of Aminoacyl-tRNAR01GM063713 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI PERONA, JOHN J. · 2001 to 2012
$3.2M
NIGMS NIH HHS GM063713NIGMS NIH HHS R01 GM063713
6 · The paper itself

Abstract

Hydrogenotrophic methanogens possessing the hydrogen-dependent dehydrogenase Hmd also encode paralogs of this protein whose function is poorly understood. Here we present biochemical evidence that the two inactive Hmd paralogs of Methanocaldococcus jannaschii, HmdII and HmdIII, form binary and ternary complexes with several components of the protein translation apparatus. HmdII and HmdIII, but not the active dehydrogenase Hmd, bind with micromolar binding affinities to a number of tRNAs and form ternary complexes with tRNA(Pro) and prolyl-tRNA synthetase (ProRS). Fluorescence spectroscopy experiments also suggest that binding of HmdII and ProRS involves distinct binding determinants on the tRNA. These biochemical data suggest the possibility of a regulatory link between energy production and protein translation pathways that may allow a rapid cellular response to altered environmental conditions.

Indexed as

Amino Acid SequenceArchaeal ProteinsHydrogenMethanococcaceaeModels, MolecularMolecular Sequence DataProtein MultimerizationProtein Structure, QuaternaryThermodynamicsArchaeal ProteinsHydrogen

Identifiers

PMID22401293
PMCPMC3324563
OpenAlexW2038106640

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.