Evidence map›Paper›PMID 22399800›Full record

ArticleJournal of cell science2012

The endonuclease Ankle1 requires its LEM and GIY-YIG motifs for DNA cleavage in vivo.

Andreas Brachner, Juliane Braun, Medini Ghodgaonkar, Dennis Castor, Livija Zlopasa, Veronika Ehrlich, Josef Jiricny, Josef Gotzmann, Siegfried Knasmüller, Roland Foisner

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cell science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Sequence and structural alignments reveal insights into ANKLE2 evolution and function.Protein science : a publication of the Protein Society · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Coordinated roles of SLX4 and MutSβ in DNA repair and the maintenance of genome stability.Critical reviews in biochemistry and molecular biology · 2021
    Review
  18. The Last Chance Saloon.Frontiers in cell and developmental biology · 2021
    Review
  19. Article
  20. Human ANKLE1 Is a Nuclease Specific for Branched DNA.Journal of molecular biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Andreas BrachnerMax F. Perutz Laboratories, Medical University of Vienna, Dr. Bohr-Gasse 9, A-1030, Vienna, Austria.
Juliane Braun
Medini Ghodgaonkar
Dennis Castor
Livija Zlopasa
Veronika Ehrlich
Josef Jiricny
Josef Gotzmann
Siegfried Knasmüller
Roland Foisner
Medical University of Vienna · ATMax Perutz Labs · ATUniversity of Zurich · CH

Funding

Austrian Science Fund FWF P 22569
6 · The paper itself

Abstract

The LEM domain (for lamina-associated polypeptide, emerin, MAN1 domain) defines a group of nuclear proteins that bind chromatin through interaction of the LEM motif with the conserved DNA crosslinking protein, barrier-to-autointegration factor (BAF). Here, we describe a LEM protein annotated in databases as 'Ankyrin repeat and LEM domain-containing protein 1' (Ankle1). We show that Ankle1 is conserved in metazoans and contains a unique C-terminal GIY-YIG motif that confers endonuclease activity in vitro and in vivo. In mammals, Ankle1 is predominantly expressed in hematopoietic tissues. Although most characterized LEM proteins are components of the inner nuclear membrane, ectopic Ankle1 shuttles between cytoplasm and nucleus. Ankle1 enriched in the nucleoplasm induces DNA cleavage and DNA damage response. This activity requires both the catalytic C-terminal GIY-YIG domain and the LEM motif, which binds chromatin via BAF. Hence, Ankle1 is an unusual LEM protein with a GIY-YIG-type endonuclease activity in higher eukaryotes.

Indexed as

DNA CleavageAmino Acid MotifsAnimalsCell LineCell NucleusConserved SequenceCytoplasmDNA DamageEndonucleasesGene Expression ProfilingHematopoietic SystemHumansImmunoprecipitationOrgan SpecificityPolymerase Chain ReactionProtein Structure, TertiaryANKLE1 protein, humanEndonucleases

Identifiers

PMID22399800
PMCPMC4335191
OpenAlexW1988267044

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.