ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012
Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
21 citing papers in PubMed, 52 citations in OpenAlex.
- Study on SupergenusPlants (Basel, Switzerland) · 2022Review
- Combined transcriptomic and metabolic analyses reveal potential mechanism for fruit development and quality control of Chinese raspberry (Rubus chingii Hu).Plant cell reports · 2021Article
- Article
- Transcriptome sequencing of Himalayan Raspberry (3 Biotech · 2019Article
- Two Loci,Frontiers in plant science · 2019Article
- Genetic and genomic resources forHorticulture research · 2019Review
- Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening.BMC genetics · 2018Article
- Mapping and expression of genes associated with raspberry fruit ripening and softening.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- DNA-informed breeding of rosaceous crops: promises, progress and prospects.Horticulture research · 2017Review
- High-density SNP-based genetic maps for the parents of an outcrossed and a selfed tetraploid garden rose cross, inferred from admixed progeny using the 68k rose SNP array.Horticulture research · 2016Article
- Rubus crataegifolius Bunge regulates adipogenesis through Akt and inhibits high-fat diet-induced obesity in rats.Nutrition & metabolism · 2016Article
- Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.).BMC plant biology · 2015Article
- A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag(4) conferring resistance to the aphid Amphorophora agathonica.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Novel microsatellite markers acquired from Rubus coreanus Miq. and cross-amplification in other Rubus species.Molecules (Basel, Switzerland) · 2015Article
- Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives.Horticulture research · 2014Review
- Article
- Article
- Genetic map of the primocane-fruiting and thornless traits of tetraploid blackberry.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- QTL involved in the modification of cyanidin compounds in black and red raspberry fruit.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation.BMC genomics · 2013Article
Corrections and comments
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Authors and funding
9 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The genus Rubus belongs to the Rosaceae and is comprised of 600-800 species distributed world-wide. To date, genetic maps of the genus consist largely of non-transferable markers such as amplified fragment length polymorphisms. An F(1) population developed from a cross between an advanced breeding selection of Rubus occidentalis (96395S1) and R. idaeus 'Latham' was used to construct a new genetic map consisting of DNA sequence-based markers. The genetic linkage maps presented here are constructed of 131 markers on at least one of the two parental maps. The majority of the markers are orthologous, including 14 Rosaceae conserved orthologous set markers, and 60 new gene-based markers developed for raspberry. Thirty-four published raspberry simple sequence repeat markers were used to align the new maps to published raspberry maps. The 96395S1 genetic map consists of six linkage groups (LG) and covers 309 cM with an average of 10 cM between markers; the 'Latham' genetic map consists of seven LG and covers 561 cM with an average of 5 cM between markers. We used BLAST analysis to align the orthologous sequences used to design primer pairs for Rubus genetic mapping with the genome sequences of Fragaria vesca 'Hawaii 4', Malus × domestica 'Golden Delicious', and Prunus 'Lovell'. The alignment of the orthologous markers designed here suggests that the genomes of Rubus and Fragaria have a high degree of synteny and that synteny decreases with phylogenetic distance. Our results give unprecedented insights into the genome evolution of raspberry from the putative ancestral genome of the single ancestor common to Rosaceae.
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