Evidence map›Paper›PMID 22398295›Full record

ArticleJournal of virology2012

Structure of the Fab-labeled "breathing" state of native poliovirus.

Jun Lin, Lily Y Lee, Merja Roivainen, David J Filman, James M Hogle, David M Belnap

Abstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

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  11. Physical virology: From virus self-assembly to particle mechanics.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2020
    Review
  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jun LinDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, USA.
Lily Y Lee
Merja Roivainen
David J Filman
James M Hogle
David M Belnap

Funding

Structural Analysis of Enterovirus Cell Entry PathwaysR01AI020566 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI HOGLE, JAMES M · 1985 to 2018
$9.0M
Temperature-dependent, Intermediate Particles from the Entry of Picornaviruses inR15AI084085 · NIAID · BRIGHAM YOUNG UNIVERSITY · PI BELNAP, DAVID MICHAEL · 2009 to 2009
$225k
NIAID NIH HHS R01 AI020566NIAID NIH HHS R01AI020566NIAID NIH HHS R15 AI084085NIAID NIH HHS R15AI084085
6 · The paper itself

Abstract

At 37°C, the structure of poliovirus is dynamic, and internal polypeptides VP4 and N terminus of VP1 (residues 1 to 53) externalize reversibly. An Fab fragment of a monospecific antibody, which binds to residues 39 to 55 of VP1, was utilized to locate the N termini of VP1 in native (160S) particles in this "breathing" state. Fab and virus were mixed and imaged via cryogenic electron microscopy. The resulting reconstruction showed the capsid expands similarly to the irreversibly altered cell entry intermediate (135S) particle, but the N terminus of VP1 is located near the 2-fold axes, instead of the "propeller tip" as in 135S particles.

Indexed as

CapsidCapsid ProteinsCryoelectron MicroscopyHumansImmunoglobulin Fab FragmentsModels, MolecularPoliomyelitisPoliovirusCapsid ProteinsImmunoglobulin Fab FragmentsVP1 protein, Poliovirus

Identifiers

PMID22398295
PMCPMC3347258

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.