Evidence map›Paper›PMID 22396527›Full record

ArticleNucleic acids research2012

Architecture of the trypanosome RNA editing accessory complex, MRB1.

Michelle L Ammerman, Kurtis M Downey, Hassan Hashimi, John C Fisk, Danielle L Tomasello, Drahomíra Faktorová, Lucie Kafková, Tony King, Julius Lukes, Laurie K Read

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
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  7. Article
  8. KRGG1 function in RNA editing inRNA (New York, N.Y.) · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Guide RNA Repertoires in the Main Lineages ofFrontiers in cellular and infection microbiology · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Michelle L AmmermanDepartment of Microbiology and Immunology, School of Medicine, State University of New York at Buffalo, Buffalo, NY 14214, USA.
Kurtis M Downey
Hassan Hashimi
John C Fisk
Danielle L Tomasello
Drahomíra Faktorová
Lucie Kafková
Tony King
Julius Lukes
Laurie K Read
University at Buffalo, State University of New York · USInstitute of Parasitology of the Slovak Academy of Sciences · SKSewanee: The University of the South · US

Funding

Regulation of RNA editing in Trypansoma bruceiR01AI061580 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2006 to 2015
$3.0M
Cis- and trans-acting factors in mitochondrial RNA decayR01AI077520 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2008 to 2012
$1.9M
NIAID NIH HHS F32 AI07718501NIAID NIH HHS R01 AI061580NIAID NIH HHS R01 AI077520
6 · The paper itself

Abstract

Trypanosoma brucei undergoes an essential process of mitochondrial uridine insertion and deletion RNA editing catalyzed by a 20S editosome. The multiprotein mitochondrial RNA-binding complex 1 (MRB1) is emerging as an equally essential component of the trypanosome RNA editing machinery, with additional functions in gRNA and mRNA stabilization. The distinct and overlapping protein compositions of reported MRB1 complexes and diverse MRB1 functions suggest that the complex is composed of subcomplexes with RNA-dependent and independent interactions. To determine the architecture of the MRB1 complex, we performed a comprehensive yeast two-hybrid analysis of 31 reported MRB1 proteins. We also used in vivo analyses of tagged MRB1 components to confirm direct and RNA-mediated interactions. Here, we show that MRB1 contains a core complex comprised of six proteins and maintained by numerous direct interactions. The MRB1 core associates with multiple subcomplexes and proteins through RNA-enhanced or RNA-dependent interactions. These findings provide a framework for interpretation of previous functional studies and suggest that MRB1 is a dynamic complex that coordinates various aspects of mitochondrial gene regulation.

Indexed as

RNA EditingMitochondrial ProteinsProtein SubunitsProtozoan ProteinsRNA-Binding ProteinsRNA, ProtozoanTrypanosoma brucei bruceiTwo-Hybrid System TechniquesMitochondrial ProteinsProtein SubunitsProtozoan ProteinsRNA-Binding ProteinsRNA, Protozoan

Identifiers

PMID22396527
PMCPMC3384329
OpenAlexW1992864884

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.