Evidence map›Paper›PMID 22396526›Full record

ArticleNucleic acids research2012

Related haloarchaeal pleomorphic viruses contain different genome types.

Ana Sencilo, Lars Paulin, Stefanie Kellner, Mark Helm, Elina Roine

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. ICTV Virus Taxonomy Profile:The Journal of general virology · 2022
    Article
  7. Isolation of a virus causing a chronic infection in the archaeal model organismProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Viruses · 2022
    Article
  9. Review
  10. Cellular and Genomic Properties ofFrontiers in microbiology · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. ICTV Virus Taxonomy Profile: Pleolipoviridae.The Journal of general virology · 2017
    Article
  18. The enigmatic archaeal virosphere.Nature reviews. Microbiology · 2017
    Review
  19. Structure and mechanisms of viral transcription factors in archaea.Extremophiles : life under extreme conditions · 2017
    Review
  20. The evolutionary ecology of molecular replicators.Royal Society open science · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ana SenciloDepartment of Biosciences and Institute of Biotechnology, University of Helsinki, P.O. Box 56, FIN-00014 University of Helsinki, Finland.
Lars Paulin
Stefanie Kellner
Mark Helm
Elina Roine

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Archaeal viruses have been the subject of recent interest due to the diversity discovered in their virion architectures. Recently, a new group of haloarchaeal pleomorphic viruses has been discovered. It is distinctive in terms of the virion morphology and different genome types (ssDNA/dsDNA) harboured by rather closely related representatives. To date there are seven isolated viruses belonging to this group. Most of these share a cluster of five conserved genes, two of which encode major structural proteins. Putative proviruses and proviral remnants containing homologues of the conserved gene cluster were also identified suggesting a long-standing relationship of these viruses with their hosts. Comparative genomic analysis revealed three different ways of the genome organization, which possibly reflect different replication strategies employed by these viruses. The dsDNA genomes of two of these viruses were shown to contain single-strand interruptions. Further studies on one of the genomes suggested that the interruptions are located along the genome in a sequence-specific manner and exhibit polarity in distribution.

Indexed as

Genome, ViralArchaeal VirusesBase SequenceChromatography, High Pressure LiquidDNA, ViralGenes, ViralMolecular Sequence DataNucleosidesNucleotide MotifsViral ProteinsDNA, ViralNucleosidesViral Proteins

Identifiers

PMID22396526
PMCPMC3384331

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.