Evidence map›Paper›PMID 22395449›Full record

ArticleAnalytical and bioanalytical chemistry2012

De novo subtype and strain identification of botulinum neurotoxin type B through toxin proteomics.

Suzanne R Kalb, Jakub Baudys, Jon C Rees, Theresa J Smith, Leonard A Smith, Charles H Helma, Karen Hill, Skadi Kull, Sebastian Kirchner, Martin B Dorner and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Suzanne R KalbCenters for Disease Control and Prevention, National Center for Environmental Health, Division of Laboratory Sciences, Atlanta, GA 30341, USA.
Jakub Baudys
Jon C Rees
Theresa J Smith
Leonard A Smith
Charles H Helma
Karen Hill
Skadi Kull
Sebastian Kirchner
Martin B Dorner
Brigitte G Dorner
James L Pirkle
John R Barr
Robert Koch Institute · DECenter for Environmental Health · USLos Alamos National Laboratory · USNational Center for Environmental Health · USUnited States Army Medical Research and Development Command · USUnited States Army Medical Research Institute of Infectious Diseases · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Botulinum neurotoxins (BoNTs) cause the disease botulism, which can be lethal if untreated. There are seven known serotypes of BoNT, A-G, defined by their response to antisera. Many serotypes are distinguished into differing subtypes based on amino acid sequence, and many subtypes are further differentiated into toxin variants. Previous work in our laboratory described the use of a proteomics approach to distinguish subtype BoNT/A1 from BoNT/A2 where BoNT identities were confirmed after searching data against a database containing protein sequences of all known BoNT/A subtypes. We now describe here a similar approach to differentiate subtypes BoNT/B1, /B2, /B3, /B4, and /B5. Additionally, to identify new subtypes or hitherto unpublished amino acid substitutions, we created an amino acid substitution database covering every possible amino acid change. We used this database to differentiate multiple toxin variants within subtypes of BoNT/B1 and B2. More importantly, with our amino acid substitution database, we were able to identify a novel BoNT/B subtype, designated here as BoNT/B7. These techniques allow for subtype and strain level identification of both known and unknown BoNT/B rapidly with no DNA required.

Indexed as

ProteomicsAmino Acid SequenceBotulinum ToxinsBotulinum Toxins, Type AMolecular Sequence DataTandem Mass SpectrometryBotulinum ToxinsBotulinum Toxins, Type ArimabotulinumtoxinB

Identifiers

PMID22395449
PMCPMC3309144
OpenAlexW2167563543

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.