Evidence map›Paper›PMID 22394678›Full record

ArticleHuman molecular genetics2012

Imprinting control region (ICR) of the Peg3 domain.

Joomyeong Kim, Muhammad B Ekram, Hana Kim, Mohammad Faisal, Wesley D Frey, Jennifer M Huang, KimNgoc Tran, Michelle M Kim, Sungryul Yu

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 53 citations in OpenAlex.

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  14. Frontiers in cell and developmental biology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Joomyeong KimDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA. jkim@lsu.edu
Muhammad B Ekram
Hana Kim
Mohammad Faisal
Wesley D Frey
Jennifer M Huang
KimNgoc Tran
Michelle M Kim
Sungryul Yu
Louisiana State University · US

Funding

Imprinting studies of a paternally expressed Usp29 geneR01GM066225 · NIGMS · UNIVERSITY OF CALIF-LAWRNC LVRMR NAT LAB · PI KIM, JOOMYEONG · 2004 to 2013
$2.6M
Retrotransposon as a major source to epigenetic variations in the human genomeR15ES019118 · NIEHS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI KIM, JOOMYEONG · 2010 to 2010
$436k
NIEHS NIH HHS R15 ES019118NIEHS NIH HHS R15-ES019118NIGMS NIH HHS R01 GM066225NIGMS NIH HHS R01-GM066225
6 · The paper itself

Abstract

The imprinting and transcription of the 500 kb genomic region surrounding the mouse Peg3 is predicted to be regulated by the Peg3-differentially methylated region (DMR). In the current study, this prediction was tested using a mutant mouse line lacking this potential imprinting control region (ICR). At the organismal level, paternal and maternal transmission of this knockout (KO) allele caused either reduced or increased growth rates in the mouse, respectively. In terms of the imprinting control, the paternal transmission of the KO allele resulted in bi-allelic expression of the normally maternally expressed Zim2, whereas the maternal transmission switched the transcriptionally dominant allele for Zfp264 (paternal to maternal). However, the allele-specific DNA methylation patterns of the DMRs of Peg3, Zim2 and Zim3 were not affected in the mice that inherited the KO allele either paternally or maternally. In terms of the transcriptional control, the paternal transmission caused a dramatic down-regulation in Peg3 expression, but overall up-regulation in the other nearby imprinted genes. Taken together, deletion of the Peg3-DMR caused global changes in the imprinting and transcription of the Peg3 domain, confirming that the Peg3-DMR is an ICR for this imprinted domain.

Indexed as

DNA MethylationGenomic ImprintingAllelesAnimalsAnimals, NewbornBinding SitesBlotting, WesternBrainCrosses, GeneticEmbryo, MammalianFemaleGene Expression ProfilingKruppel-Like Transcription FactorsMaleMiceMice, 129 StrainKruppel-Like Transcription FactorsPeg3 protein, mouse

Identifiers

PMID22394678
PMCPMC3363340
OpenAlexW2103855900

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.