Evidence map›Paper›PMID 22393408›Full record

ArticlePloS one2012

Macro-to-micro structural proteomics: native source proteins for high-throughput crystallization.

Monica Totir, Nathaniel Echols, Max Nanao, Christine L Gee, Alisa Moskaleva, Scott Gradia, Anthony T Iavarone, James M Berger, Andrew P May, Chloe Zubieta and 1 more

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Alphafuser: a parsimonious approach to predicting higher-order protein complexes.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
  3. Review
  4. ExploringRSC advances · 2024
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  10. Synthetic Formatotrophs for One-Carbon Biorefinery.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021
    Review
  11. Review
  12. Article
  13. Article
  14. Biotechnology reports (Amsterdam, Netherlands) · 2017
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Monica TotirDepartment of Molecular and Cell Biology, University of California, Berkeley, California, United States of America.
Nathaniel Echols
Max Nanao
Christine L Gee
Alisa Moskaleva
Scott Gradia
Anthony T Iavarone
James M Berger
Andrew P May
Chloe Zubieta
Tom Alber

Funding

The Cloning Protein Production, Crystallization, and X-ray Data Collection CoreP01AI068135 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ALBER, THOMAS C · 2006 to 2010
$13.2M
NIAID NIH HHS P01 AI068135NIAID NIH HHS P01AI068135
6 · The paper itself

Abstract

Structural biology and structural genomics projects routinely rely on recombinantly expressed proteins, but many proteins and complexes are difficult to obtain by this approach. We investigated native source proteins for high-throughput protein crystallography applications. The Escherichia coli proteome was fractionated, purified, crystallized, and structurally characterized. Macro-scale fermentation and fractionation were used to subdivide the soluble proteome into 408 unique fractions of which 295 fractions yielded crystals in microfluidic crystallization chips. Of the 295 crystals, 152 were selected for optimization, diffraction screening, and data collection. Twenty-three structures were determined, four of which were novel. This study demonstrates the utility of native source proteins for high-throughput crystallography.

Indexed as

Alcohol OxidoreductasesBacterial ProteinsCrystallizationEscherichia coliFermentationGenes, BacterialGlucose-6-Phosphate IsomeraseGlucosidasesGlutamate DehydrogenaseMass SpectrometryMolecular ConformationProteinsProteomeProteomics6-phospho-beta-glucosidaseAlcohol OxidoreductasesBacterial ProteinsD-lactaldehyde dehydrogenaseGlucose-6-Phosphate IsomeraseGlucosidasesGlutamate DehydrogenaseProteinsProteome

Identifiers

PMID22393408
PMCPMC3290569

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.