Evidence map›Paper›PMID 22391207›Full record

ArticleCell cycle (Georgetown, Tex.)2012

Role for Rif1 in the checkpoint response to damaged DNA in Xenopus egg extracts.

Sanjay Kumar, Hae Yong Yoo, Akiko Kumagai, Anna Shevchenko, Andrej Shevchenko, William G Dunphy

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Interaction of DDB1 with NBS1 in a DNA Damage Checkpoint Pathway.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Sanjay KumarDivision of Biology 147-75, California Institute of Technology, Pasadena, CA, USA.
Hae Yong Yoo
Akiko Kumagai
Anna Shevchenko
Andrej Shevchenko
William G Dunphy
Pasadena City College · USMax Planck Institute of Molecular Cell Biology and Genetics · DESamsung (United States) · US

Funding

Role of ATR in Cell Cycle CheckpointsR01GM070891 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DUNPHY, WILLIAM G · 2004 to 2018
$5.7M
ENZYMOLOGY OF MITOSIS PROMOTING FACTOR (MPF)R01GM043974 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DUNPHY, WILLIAM G · 1990 to 2022
$4.0M
Enzymology of Mitosis Promoting Factor (MPF)R37GM043974 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DUNPHY, WILLIAM G · 2002 to 2011
$4.0M
NIGMS NIH HHS GM043974NIGMS NIH HHS GM070891NIGMS NIH HHS R01 GM043974NIGMS NIH HHS R01 GM070891NIGMS NIH HHS R37 GM043974
6 · The paper itself

Abstract

TopBP1 is critical for both DNA replication and checkpoint regulation in vertebrate cells. In this study, we have identified Rif1 as a binding partner of TopBP1 in Xenopus egg extracts. In addition, Rif1 also interacts with both ATM and the Mre11-Rad50-Nbs1 (MRN) complex, which are key regulators of checkpoint responses to double-stranded DNA breaks (DSBs). Depletion of Rif1 from egg extracts compromises the activation of Chk1 in response to DSBs but not stalled replication forks. Removal of Rif1 also has a significant impact on the chromatin-binding behavior of key checkpoint proteins. In particular, binding of TopBP1, ATR and the MRN complex to chromatin containing DSBs is reduced in the absence of Rif1. Rif1 interacts with chromatin in a highly regulated and dynamic manner. In unperturbed egg extracts, the association of Rif1 with chromatin depends upon formation of replication forks. In the presence of DSBs, there is elevated accumulation of Rif1 on chromatin under conditions where the activation of ATM is suppressed. Taken together, these results suggest that Rif1 plays a dynamic role in the early steps of a checkpoint response to DSBs in the egg-extract system by promoting the correct accumulation of key regulators on the DNA.

Indexed as

DNA Breaks, Double-StrandedS Phase Cell Cycle CheckpointsAnimalsAtaxia Telangiectasia Mutated ProteinsCarrier ProteinsCell Cycle ProteinsCell NucleusChromatinDNA-Binding ProteinsEscherichia coliOvumPlasmidsProtein BindingProtein Interaction MappingProtein Serine-Threonine KinasesReplication OriginAtaxia Telangiectasia Mutated ProteinsCarrier ProteinsCell Cycle ProteinsChromatinDNA-Binding ProteinsNBN protein, XenopusProtein Serine-Threonine KinasesRNA, Small InterferingTelomere-Binding ProteinsTissue ExtractsTopBP1 protein, XenopusTumor Suppressor ProteinsXenopus Proteins

Identifiers

PMID22391207
PMCPMC3335920
OpenAlexW1964170363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.