Evidence map›Paper›PMID 22390839›Full record

ArticleVirology journal2012

Molecular characterization of a novel mycovirus in the cultivated mushroom, Lentinula edodes.

Yumi Magae

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  5. Analysis of Leishbuviridae from Trypanosomatids.Methods in molecular biology (Clifton, N.J.) · 2025
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  7. Article
  8. Review
  9. Article
  10. Review
  11. The Mycovirome in a Worldwide Collection of the Brown Rot FungusJournal of fungi (Basel, Switzerland) · 2022
    Article
  12. Characterization of a Novel Mitovirus InfectingFrontiers in microbiology · 2021
    Article
  13. Article
  14. Article
  15. Viruses infecting macrofungi.Virusdisease · 2018
    Review
  16. Article
  17. Hypovirulence ofFrontiers in microbiology · 2016
    Article
  18. A novel mycovirus from Aspergillus fumigatus contains four unique dsRNAs as its genome and is infectious as dsRNA.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  19. Article
  20. Isolation and characterization of a mycovirus in Lentinula edodes.Journal of microbiology (Seoul, Korea) · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Yumi MagaeDepartment of Applied Microbiology, Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305-8687, Japan. ymagae@ffpri.affrc.go.jp
Forestry and Forest Products Research Institute · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn the 1970s, mycoviruses were identified that infected the edible mushroom Lentinula edodes (shiitake), but they were not regarded as causal agents for mushroom diseases. None of their genes has been sequenced. In this study, the dsRNA genome of a mycovirus recently found in a shiitake commercial strain was sequenced and its molecular structure was characterized.

methodsA cDNA library was constructed from a dsRNA purified from the fruiting body of L. edodes. The virus was tentatively named L. edodes mycovirus HKB (LeV). Based on the deduced RNA-dependent RNA polymerase (RdRp) sequence, phylogenetic analysis of LeV was conducted. Because no virion particles associated with the dsRNA were observed by electron microscopic observation, atomic force microscopy (AFM) observation was chosen for achieving molecular imaging of the virus.

resultsThe 11,282-bp genome of LeV was obtained. The genome encoded two open reading frames (ORFs). ORF1 coded for a hypothetical protein and ORF2 for a putative RdRp, respectively. In addition, a region coding for a NUDIX domain was present in ORF1. There was a 62-bp intergenic region between ORF1 and RdRp. Similarity with coat protein of mycoviruses was not found within the whole sequence. Based on phylogenetic analysis of the putative RdRp sequence, LeV grouped into a clade with dsRNA found in the basidiomycetes Phlebiopsis gigantea and Helicobasidium mompa. The clade was placed apart from the Totiviridae and Chrysoviridae families. As suggested from the genome sequence, AFM revealed that the structure of LeV was linear unencapsidated dsRNA.

conclusionsThe results suggest that LeV represents a novel family of mycoviruses, found thus far only among the basidiomycetes.

Indexed as

Genome, ViralGene LibraryMicroscopy, Atomic ForceMicroscopy, ElectronMolecular Sequence DataPhylogenyRNA, Double-StrandedRNA, ViralRNA VirusesSequence Analysis, DNASequence HomologyShiitake MushroomsRNA, Double-StrandedRNA, Viral

Identifiers

PMID22390839
PMCPMC3365873
OpenAlexW2110667737

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.