Evidence map›Paper›PMID 22389482›Full record

ArticleJournal of bacteriology2012

The variable subdomain of Escherichia coli SecA functions to regulate SecA ATPase activity and ADP release.

Sanchaita Das, Lorry M Grady, Jennifer Michtavy, Yayan Zhou, Frederick M Cohan, Manju M Hingorani, Donald B Oliver

Abstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sanchaita DasDepartment of Molecular Biology and Biochemistry, Wesleyan University, Middletown, Connecticut, USA.
Lorry M Grady
Jennifer Michtavy
Yayan Zhou
Frederick M Cohan
Manju M Hingorani
Donald B Oliver

Funding

Mechanism of Protein Localization in Eschericia coliR01GM042033 · NIGMS · WESLEYAN UNIVERSITY · PI OLIVER, DONALD B. · 1989 to 2010
$3.4M
NIGMS NIH HHS GM42033NIGMS NIH HHS R01 GM042033
6 · The paper itself

Abstract

Bacterial SecA proteins can be categorized by the presence or absence of a variable subdomain (VAR) located within nucleotide-binding domain II of the SecA DEAD motor. Here we show that VAR is dispensable for SecA function, since the VAR deletion mutant secAΔ519-547 displayed a wild-type rate of cellular growth and protein export. Loss or gain of VAR is extremely rare in the history of bacterial evolution, indicating that it appears to contribute to secA function within the relevant species in their natural environments. VAR removal also results in additional secA phenotypes: azide resistance (Azi(r)) and suppression of signal sequence defects (PrlD). The SecAΔ(519-547) protein was found to be modestly hyperactive for SecA ATPase activities and displayed an accelerated rate of ADP release, consistent with the biochemical basis of azide resistance. Based on our findings, we discuss models whereby VAR allosterically regulates SecA DEAD motor function at SecYEG.

Indexed as

Adenosine DiphosphateAdenosine TriphosphatasesAmino Acid SequenceBacterial ProteinsDEAD-box RNA HelicasesEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicMembrane Transport ProteinsModels, MolecularMolecular Sequence DataMutationPhylogenyProtein BindingProtein ConformationAdenosine DiphosphateAdenosine TriphosphatasesBacterial ProteinsDEAD-box RNA HelicasesdeaD protein, E coliEscherichia coli ProteinsMembrane Transport ProteinsSecA ProteinsSEC Translocation Channels

Identifiers

PMID22389482
PMCPMC3347061

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.