Evidence map›Paper›PMID 22389096›Full record

ArticleProtein science : a publication of the Protein Society2012

Identification and removal of nitroxide spin label contaminant: impact on PRE studies of α-helical membrane proteins in detergent.

Brett M Kroncke, Linda Columbus

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Brett M KronckeDepartment of Chemistry, University of Virginia, Charlottesville, Virginia 22904, USA.
Linda Columbus

Funding

Structure and dynamics of bacterial membrane protein - receptor interactionsR01GM087828 · NIGMS · UNIVERSITY OF VIRGINIA · PI COLUMBUS, LINDA M · 2009 to 2018
$2.7M
NIGMS NIH HHS R01 GM087828NIGMS NIH HHS R01GM087828-02
6 · The paper itself

Abstract

NMR paramagnetic relaxation enhancement (PRE) provides long-range distance constraints (~15-25 Å) that can be critical to determining overall protein topology, especially where long-range NOE information is unavailable such as in the case of larger proteins that require deuteration. However, several challenges currently limit the use of NMR PRE for α-helical membrane proteins. One challenge is the nonspecific association of the nitroxide spin label to the protein-detergent complex that can result in spurious PRE derived distance restraints. The effect of the nitroxide spin label contaminant is evaluated and quantified and a robust method for the removal of the contaminant is provided to advance the application of PRE restraints to membrane protein NMR structure determination.

Indexed as

Spin LabelsBacterial ProteinsCell MembraneCloning, MolecularCyclic N-OxidesDetergentsGenes, BacterialMagnetic Resonance SpectroscopyMembrane ProteinsMesylatesMultiprotein ComplexesProtein Structure, SecondarySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationThermotoga maritima(1-oxyl-2,2,5,5-tetramethylpyrroline-3-methyl)methanethiosulfonateBacterial ProteinsCyclic N-OxidesDetergentsMembrane ProteinsMesylatesMultiprotein ComplexesSpin Labels

Identifiers

PMID22389096
PMCPMC3375759

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.