ArticleCurrent protocols in bioinformatics2012
Using BLAT to find sequence similarity in closely related genomes.
Article in Current protocols in bioinformatics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
21 citing papers in PubMed.
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- CRISPR-Cas9 Methods and Key Considerations in the Production ofCold Spring Harbor protocols · 2023Article
- Molecular advances to study the function, evolution and spectral tuning of arthropod visual opsins.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022Review
- A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation.Communications biology · 2022Article
- Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource.Genome biology · 2022Review
- Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae).BMC plant biology · 2021Article
- Alignment of Alzheimer's Disease Amyloid-β Peptide and Herpes Simplex Virus-1 pUL15 C-Terminal Nuclease Domain.Journal of Alzheimer's disease reports · 2020Article
- Human Gene Sequences in SARS-CoV-2 and Other Viruses.In vivo (Athens, Greece) · 2020Article
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- Mouse mammary tumor viral env sequences are not present in the human genome but are present in breast tumors and normal breast tissues.Virus research · 2019Article
- Complete Chloroplast Genome Sequences ofMolecules (Basel, Switzerland) · 2019Article
- Complete chloroplast genome sequence and phylogenetic analysis of Spathiphyllum 'Parrish'.PloS one · 2019Article
- Genome-Wide Identification and Characterization of Long Non-Coding RNA in Wheat Roots in Response to CaFrontiers in plant science · 2018Article
- Targeted next-generation sequencing for TP53, RAS, BRAF, ALK and NF1 mutations in anaplastic thyroid cancer.Endocrine · 2016Article
- Comprehensive Analysis of Disease-Related Genes in Chronic Lymphocytic Leukemia by Multiplex PCR-Based Next Generation Sequencing.PloS one · 2015Article
- Genomic organization, transcriptomic analysis, and functional characterization of avian α- and β-keratins in diverse feather forms.Genome biology and evolution · 2014Article
- BambooGDB: a bamboo genome database with functional annotation and an analysis platform.Database : the journal of biological databases and curation · 2014Article
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- CRISPR interference (CRISPRi) for sequence-specific control of gene expression.Nature protocols · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
The BLAST-Like Alignment Tool (BLAT) is used to find genomic sequences that match a protein or DNA sequence submitted by the user. BLAT is typically used for searching similar sequences within the same or closely related species. It was developed to align millions of expressed sequence tags and mouse whole-genome random reads to the human genome at a higher speed. It is freely available either on the Web or as a downloadable stand-alone program. BLAT search results provide a link for visualization in the University of California, Santa Cruz (UCSC) Genome Browser, where associated biological information may be obtained. Three example protocols are given: using an mRNA sequence to identify the exon-intron locations and associated gene in the genomic sequence of the same species, using a protein sequence to identify the coding regions in a genomic sequence and to search for gene family members in the same species, and using a protein sequence to find homologs in another species.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.