Evidence map›Paper›PMID 22387989›Full record

ArticleCancer letters2012

Pan-colonic field defects are detected by CGH in the colons of UC patients with dysplasia/cancer.

Lisa A Lai, Rosa Ana Risques, Mary P Bronner, Peter S Rabinovitch, David Crispin, Ru Chen, Teresa A Brentnall

Abstract read
In one paragraph

Article in Cancer letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Clonal evolution of colorectal cancer in IBD.Nature reviews. Gastroenterology & hepatology · 2017
    Review
  8. Colorectal Cancer Blood-Based Biomarkers.Gastroenterology research and practice · 2017
    Review
  9. Biomarkers for colitis-associated colorectal cancer.World journal of gastroenterology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lisa A LaiDepartment of Medicine, University of Washington, Seattle, WA, United States.
Rosa Ana Risques
Mary P Bronner
Peter S Rabinovitch
David Crispin
Ru Chen
Teresa A Brentnall
University of Washington · USUniversity of Utah · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
SPECIFICITY OF OXYGEN DNA DAMAGE AND MUTAGENESISP01AG001751 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2021
$29.6M
University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI David J. Marcinek, Jessica E Young · 1995 to 2026
$27.1M
HISTOLOGIC AND MOLECULAR CHANGES IN UC TUMORIGENESISR01CA068124 · NCI · UNIVERSITY OF WASHINGTON · PI BRENTNALL, TERESA A · 1995 to 2010
$3.5M
Seattle Cancer and Aging ProgramP20CA103728 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI RABINOVITCH, PETER S · 2003 to 2007
$3.4M
Senescence biomarkers for cancer prevention in ulcerative colitisK07CA137136 · NCI · UNIVERSITY OF WASHINGTON · PI RISQUES, ROSA ANA · 2009 to 2013
$664k
NCI NIH HHS K07 CA137136NCI NIH HHS P20 CA103728NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA068124NIA NIH HHS P01 AG001751NIA NIH HHS P30 AG013280
6 · The paper itself

Abstract

BAC arrays were used to evaluate genomic instability along the colon of patients with ulcerative colitis (UC). Genomic instability increases with disease progression and biopsies more proximal to dysplasia showed increased instability. Pan-colonic field copy number gain or loss involving small (<1Mb) regions were detected in most patients and were particularly apparent in the UC progressor patients who had dysplasia or cancer. Chromosomal copy gains or losses affecting large regions were mainly restricted to dysplastic biopsies. Areas of significant chromosomal losses were detected in the UC progressors on chromosomes 2q36, 3q25, 3p21, 4q34, 4p16.2, 15q22, and 16p13 (p-value⩽0.04). These results extend our understanding of the dynamic nature of pan-colonic genomic instability in this disease.

Indexed as

Genomic InstabilityAdultColitis, UlcerativeColonColorectal NeoplasmsComparative Genomic HybridizationDisease ProgressionDNA Copy Number VariationsHumansMiddle Aged

Identifiers

PMID22387989
PMCPMC3406733
OpenAlexW2043105439

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.