Evidence map›Paper›PMID 22386706›Full record

ArticleGenomics2012

Genomic and functional characterization of the diverse immunoglobulin domain-containing protein (DICP) family.

Robert N Haire, John P Cannon, Marci L O'Driscoll, David A Ostrov, M Gail Mueller, Poem M Turner, Ronda T Litman, Gary W Litman, Jeffrey A Yoder

Abstract read
In one paragraph

Article in Genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Direct male development in chromosomally ZZ zebrafish.Frontiers in cell and developmental biology · 2024
    Article
  2. Article
  3. Article
  4. Spotted Gar and the Evolution of Innate Immune Receptors.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2017
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Robert N HaireDepartment of Pediatrics, University of South Florida College of Medicine, USF/ACH Children's Research Institute, 140 7th Avenue South, St. Petersburg, FL 33701, USA.
John P Cannon
Marci L O'Driscoll
David A Ostrov
M Gail Mueller
Poem M Turner
Ronda T Litman
Gary W Litman
Jeffrey A Yoder

Funding

UF Clinical and Translational Science AwardUL1TR000064 · NCATS · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2012 to 2014
$12.2M
EVOLUTIONARY ORIGINS OF IMMUNE-TYPE GENESR01AI023338 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI LITMAN, GARY WILLIAM · 1985 to 2014
$3.6M
Novel Innate Immune Receptors in ZebrafishR01AI057559 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI LITMAN, GARY WILLIAM · 2005 to 2013
$3.4M
REGULATION-LYMPHOKINE PRODUCTION BY HUMAN T LYMPHOCYTESR01AI023337 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI PARMELY, MICHAEL J · 1987 to 1989
–
NCATS NIH HHS UL1 TR000064NIAID NIH HHS R01 AI023338NIAID NIH HHS R01 AI057559NIAID NIH HHS R01 AI23337
6 · The paper itself

Abstract

A heretofore-unrecognized multigene family encoding diverse immunoglobulin (Ig) domain-containing proteins (DICPs) was identified in the zebrafish genome. Twenty-nine distinct loci mapping to three chromosomal regions encode receptor-type structures possessing two classes of Ig ectodomains (D1 and D2). The sequence and number of Ig domains, transmembrane regions and signaling motifs vary between DICPs. Interindividual polymorphism and alternative RNA processing contribute to DICP diversity. Molecular models indicate that most D1 domains are of the variable (V) type; D2 domains are Ig-like. Sequence differences between D1 domains are concentrated in hypervariable regions on the front sheet strands of the Ig fold. Recombinant DICP Ig domains bind lipids, a property shared by mammalian CD300 and TREM family members. These findings suggest that novel multigene families encoding diversified immune receptors have arisen in different vertebrate lineages and affect parallel patterns of ligand recognition that potentially impact species-specific advantages.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBinding SitesChromosome MappingCloning, MolecularDNA, ComplementaryGenetic VariationGenomicsImmunoglobulinsModels, MolecularMolecular Sequence DataMultigene FamilyPhospholipidsPhylogenyProtein BindingDICP1.1 protein, zebrafishDICP2.1 protein, zebrafishDICP3.1 protein, zebrafishDNA, ComplementaryImmunoglobulinsPhospholipidsProtein IsoformsReceptors, ImmunologicZebrafish Proteins

Identifiers

PMID22386706
PMCPMC3351558

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.