Evidence map›Paper›PMID 22385863›Full record

ArticleBiophysical journal2012

A delicate interplay of structure, dynamics, and thermodynamics for function: a high pressure NMR study of outer surface protein A.

Ryo Kitahara, Alana K Simorellis, Kazumi Hata, Akihiro Maeno, Shigeyuki Yokoyama, Shohei Koide, Kazuyuki Akasaka

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. How internal cavities destabilize a protein.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  4. Article
  5. Analysis of OBiophysical journal · 2017
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  11. Transient conformational fluctuation of TePixD during a reaction.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Ryo KitaharaCollege of Pharmaceutical Sciences, Ritsumeikan University, Shiga, Japan.
Alana K Simorellis
Kazumi Hata
Akihiro Maeno
Shigeyuki Yokoyama
Shohei Koide
Kazuyuki Akasaka
Kindai University · JPRitsumeikan University · JPSPring-8 · JPSystems Biology Institute · JPUniversity of Chicago · USUniversity of Utah · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Outer surface protein A (OspA) is a crucial protein in the infection of Borrelia burgdorferi causing Lyme disease. We studied conformational fluctuations of OspA with high-pressure (15)N/(1)H two-dimensional NMR along with high-pressure fluorescence spectroscopy. We found evidence within folded, native OspA for rapid local fluctuations of the polypeptide backbone in the nonglobular single layer β-sheet connecting the N- and C-terminal domains with τ << ms, which may give the two domains certain independence in mobility and thermodynamic stability. Furthermore, we found that folded, native OspA is in equilibrium (τ >> ms) with a minor conformer I, which is almost fully disordered and hydrated for the entire C-terminal part of the polypeptide chain from β8 to the C-terminus. Conformer I is characterized with ΔG(0) = 32 ± 9 kJ/mol and ΔV(0) = -140 ± 40 mL/mol, populating only ∼0.001% at 40°C at 0.1 MPa, pH 5.9. Because in the folded conformer the receptor binding epitope of OspA is buried in the C-terminal domain, its transition into conformer I under in vivo conditions may be critical for the infection of B. burgdorferi. The formation and stability of the peculiar conformer I are apparently supported by a large packing defect or cavity located in the C-terminal domain.

Indexed as

Nuclear Magnetic Resonance, BiomolecularPressureAntigens, SurfaceBacterial Outer Membrane ProteinsBacterial VaccinesLipoproteinsModels, MolecularProtein FoldingProtein Structure, SecondarySpectrometry, FluorescenceThermodynamicsAntigens, SurfaceBacterial Outer Membrane ProteinsBacterial VaccinesLipoproteinsOspA protein

Identifiers

PMID22385863
PMCPMC3283806
OpenAlexW2048700985

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.