Evidence map›Paper›PMID 22385862›Full record

ArticleBiophysical journal2012

Effects of Hofmeister ions on the α-helical structure of proteins.

Alvaro H Crevenna, Nikolaus Naredi-Rainer, Don C Lamb, Roland Wedlich-Söldner, Joachim Dzubiella

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  9. The Thermodynamics of Anion Complexation to Nonpolar Pockets.The journal of physical chemistry. B · 2018
    Article
  10. Article
  11. Article
  12. Scorpion toxins prefer salt solutions.Journal of molecular modeling · 2015
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Alvaro H CrevennaCellular Dynamics and Cell Patterning, Max Planck Institute of Biochemistry, Martinsried, Germany. crevenna@biochem.mpg.de
Nikolaus Naredi-Rainer
Don C Lamb
Roland Wedlich-Söldner
Joachim Dzubiella
Max Planck Institute of Biochemistry · DECenter for Integrated Protein Science Munich · DEHelmholtz-Zentrum Berlin für Materialien und Energie · DEUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular conformation of proteins is sensitive to the nature of the aqueous environment. In particular, the presence of ions can stabilize or destabilize (denature) protein secondary structure. The underlying mechanisms of these actions are still not fully understood. Here, we combine circular dichroism (CD), single-molecule Förster resonance energy transfer, and atomistic computer simulations to elucidate salt-specific effects on the structure of three peptides with large α-helical propensity. CD indicates a complex ion-specific destabilization of the α-helix that can be rationalized by using a single salt-free computer simulation in combination with the recently introduced scheme of ion-partitioning between nonpolar and polar peptide surfaces. Simulations including salt provide a molecular underpinning of this partitioning concept. Furthermore, our single-molecule Förster resonance energy transfer measurements reveal highly compressed peptide conformations in molar concentrations of NaClO(4) in contrast to strong swelling in the presence of GdmCl. The compacted states observed in the presence of NaClO(4) originate from a tight ion-backbone network that leads to a highly heterogeneous secondary structure distribution and an overall lower α-helical content that would be estimated from CD. Thus, NaClO(4) denatures by inducing a molten globule-like structure that seems completely off-pathway between a fully folded helix and a coil state.

Indexed as

Amino Acid SequenceFluorescence Resonance Energy TransferMolecular Dynamics SimulationMolecular Sequence DataPeptidesPerchloratesProtein DenaturationProteinsProtein Structure, SecondarySaltsSodium CompoundsPeptidesPerchloratesProteinsSaltsSodium Compoundssodium perchlorate

Identifiers

PMID22385862
PMCPMC3283803
OpenAlexW2128144508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.