Evidence map›Paper›PMID 22385861›Full record

ArticleBiophysical journal2012

A desolvation model for trifluoroethanol-induced aggregation of enhanced green fluorescent protein.

Valerie L Anderson, Watt W Webb

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Trifluoroethanol and the behavior of a tardigrade desiccation-tolerance protein.Protein science : a publication of the Protein Society · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
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  8. Article
  9. Structural basis of fluorescence quenching in caspase activatable-GFP.Protein science : a publication of the Protein Society · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Valerie L AndersonSchool of Applied and Engineering Physics, Cornell University, Ithaca, New York, USA.
Watt W Webb
Cornell University · US

Funding

Nascent Dynamic Intermediates in Amyloid AggregationR21AG026650 · NIA · CORNELL UNIVERSITY ITHACA · PI WEBB, WATT W · 2005 to 2006
$365k
NIA NIH HHS 5 R21 AG026650NIA NIH HHS R21 AG026650
6 · The paper itself

Abstract

Studies of amyloid disease-associated proteins in aqueous solutions containing 2,2,2-trifluoroethanol (TFE) have shown that the formation of structural intermediates is often correlated with enhanced protein aggregation. Here, enhanced green fluorescent protein (EGFP) is used as a model protein system to investigate the causal relationship between TFE-induced structural transitions and aggregation. Using circular dichroism spectroscopy, light scattering measurements, and transmission electron microscopy imaging, we demonstrate that population of a partially α-helical, monomeric intermediate is roughly correlated with the growth of β-sheet-rich, flexible fibrils for acid-denatured EGFP. By fitting our circular dichroism data to a model in which TFE-water mixtures are assumed to be ideal solutions, we show that increasing entropic costs of protein solvation in TFE-water mixtures may both cause the population of the intermediate state and increase aggregate production. Tertiary structure and electrostatic repulsion also impede aggregation. We conclude that initiation of EGFP aggregation in TFE likely involves overcoming of multiple protective factors, rather than stabilization of aggregation-prone structural elements.

Indexed as

Protein MultimerizationAnimalsGreen Fluorescent ProteinsHydrogen-Ion ConcentrationHydrozoaProtein Structure, SecondaryProtein Structure, TertiarySolventsSpectrometry, FluorescenceThermodynamicsTrifluoroethanolenhanced green fluorescent proteinGreen Fluorescent ProteinsSolventsTrifluoroethanol

Identifiers

PMID22385861
PMCPMC3283811
OpenAlexW2064005299

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.