Evidence map›Paper›PMID 22384405›Full record

ArticleG3 (Bethesda, Md.)2012

Narrowing Down the Mapping of Plant Sex-Determination Regions Using New Y-Chromosome-Specific Markers and Heavy-Ion Beam Irradiation-Induced Y-Deletion Mutants in Silene latifolia.

Naoko Fujita, Chihiro Torii, Kotaro Ishii, Wataru Aonuma, Yuji Shimizu, Yusuke Kazama, Tomoko Abe, Shigeyuki Kawano

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Recreating viable YYNature communications · 2026
    Article
  2. Sexy ways: approaches to studying plant sex chromosomes.Journal of experimental botany · 2024
    Review
  3. Evolution of sex-determination in dioecious plants: From active Y to X/A balance?BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  4. Labile sex expression in angiosperm species with sex chromosomes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  5. Some thoughts about the words we use for thinking about sex chromosome evolution.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  6. Development of the VIGS System in the Dioecious PlantInternational journal of molecular sciences · 2019
    Article
  7. Article
  8. Development of an X-specific marker and identification of YY individuals in spinach.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Naoko Fujita
Chihiro Torii
Kotaro Ishii
Wataru Aonuma
Yuji Shimizu
Yusuke Kazama
Tomoko Abe
Shigeyuki Kawano
The University of Tokyo · JPRIKEN Nishina Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Silene latifolia is a well-studied model system for plant XY sex determination. Three maleness factors are thought to function on the Y chromosome, gynoecium suppression factor (GSF), stamen-promoting factor (SPF), and male fertility factor (MFF), and their deletions result in hermaphrodites, anther defects, and pollen defects, respectively. Although a framework map of the Y chromosome exists, the sex determination genes have not been identified, and no markers close enough to potentially be used for BAC library screening are yet available. The analysis of Y deletion mutants by Y-chromosome-specific STS markers is an efficient way to isolate sex determination regions, but more Y-specific STS markers are needed to accelerate the exploration of sex determination factors. Herein, we report a marker design method that uses simple sequence repeats, which is especially effective on the Y chromosome of S. latifolia because it contains many simple sequence repeats. Six new Y-chromosome-specific STS markers were obtained, SmicSy1-6. These were used to detect relatively small Y deletion sites in heavy-ion beam irradiation-induced mutants. The mapping of male sex determination regions was narrowed down by using more markers and smaller-sized Y deletion mutants. One new marker, SmicSy6, is a proximal marker to SPF and, thus, a second index for SPF. The region including SPF is thought to be located between two SPF proximal markers. The flower phenotype correlates with the deletion size of SPF using SPF proximal markers. These findings represent new progress in isolating the sex determination factor, which has been studied for more than 50 years.

Indexed as

sex chromosomesSilene latifoliasimple sequence repeatSTS markerXY

Identifiers

PMID22384405
PMCPMC3284334
OpenAlexW2118797352

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.