ArticleG3 (Bethesda, Md.)2012
A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome.
Article in G3 (Bethesda, Md.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.
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Who cites it
59 citing papers in PubMed.
- Genomic characterization of a MAGIC population containing introgressions from four tetraploid Gossypium species.The plant genome · 2026Article
- Genetic basis and role of exotic accessions in cultivated cotton fiber quality improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Development and Characterization of Synthetic Allotetraploids Between Diploid SpeciesPlants (Basel, Switzerland) · 2025Article
- Article
- Integrating RTM-GWAS and meta‑QTL data revealed genomic regions and candidate genes associated with the first fruit branch node and its height in upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Drought response revealed by chromatin organization variation and transcriptional regulation in cotton.BMC biology · 2024Article
- Genomic and Cytogenetic Analysis of Synthetic Polyploids between Diploid and Tetraploid Cotton (Plants (Basel, Switzerland) · 2023Article
- Genetic Analysis of Mutagenesis That Induces the Photoperiod Insensitivity of Wild CottonPlants (Basel, Switzerland) · 2022Article
- GBS-SNP and SSR based genetic mapping and QTL analysis for drought tolerance in upland cotton.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Anchoring a genetic map of an interspecific backcross two family to the genome builds of Elaeis.Journal of genetics · 2021Article
- Enhancing Upland cotton for drought resilience, productivity, and fiber quality: comparative evaluation and genetic dissection.Molecular genetics and genomics : MGG · 2020Article
- Sequence Composition of Bacterial Chromosome Clones in a Transgressive Root-Knot Nematode Resistance Chromosome Region in Tetraploid Cotton.Frontiers in plant science · 2020Article
- Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing.Genome biology and evolution · 2019Article
- QTL delineation for five fiber quality traits based on an intra-specific Gossypium hirsutum L. recombinant inbred line population.Molecular genetics and genomics : MGG · 2018Article
- Recent insights into cotton functional genomics: progress and future perspectives.Plant biotechnology journal · 2018Review
- Article
- Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs.Plant biotechnology journal · 2017Article
- Chromosome structural variation of two cultivated tetraploid cottons and their ancestral diploid species based on a new high-density genetic map.Scientific reports · 2017Article
- Identification of genes related to salt stress tolerance using intron-length polymorphic markers, association mapping and virus-induced gene silencing in cotton.Scientific reports · 2017Article
- Insights Into Upland Cotton (Genomics insights · 2017Article
Corrections and comments
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Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genetic linkage maps play fundamental roles in understanding genome structure, explaining genome formation events during evolution, and discovering the genetic bases of important traits. A high-density cotton (Gossypium spp.) genetic map was developed using representative sets of simple sequence repeat (SSR) and the first public set of single nucleotide polymorphism (SNP) markers to genotype 186 recombinant inbred lines (RILs) derived from an interspecific cross between Gossypium hirsutum L. (TM-1) and G. barbadense L. (3-79). The genetic map comprised 2072 loci (1825 SSRs and 247 SNPs) and covered 3380 centiMorgan (cM) of the cotton genome (AD) with an average marker interval of 1.63 cM. The allotetraploid cotton genome produced equivalent recombination frequencies in its two subgenomes (At and Dt). Of the 2072 loci, 1138 (54.9%) were mapped to 13 At-subgenome chromosomes, covering 1726.8 cM (51.1%), and 934 (45.1%) mapped to 13 Dt-subgenome chromosomes, covering 1653.1 cM (48.9%). The genetically smallest homeologous chromosome pair was Chr. 04 (A04) and 22 (D04), and the largest was Chr. 05 (A05) and 19 (D05). Duplicate loci between and within homeologous chromosomes were identified that facilitate investigations of chromosome translocations. The map augments evidence of reciprocal rearrangement between ancestral forms of Chr. 02 and 03 versus segmental homeologs 14 and 17 as centromeric regions show homeologous between Chr. 02 (A02) and 17 (D02), as well as between Chr. 03 (A03) and 14 (D03). This research represents an important foundation for studies on polyploid cottons, including germplasm characterization, gene discovery, and genome sequence assembly.
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