ArticleG3 (Bethesda, Md.)2011
Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.
Article in G3 (Bethesda, Md.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 1 of them a synthesis that pooled it.
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Who cites it
48 citing papers in PubMed, 1 synthesis or guideline pooled it, 123 citations in OpenAlex.
- QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea.BMC plant biology · 2013Pooled it
- Reference genome sequence and population genomic analysis of peas provide insights into the genetic basis of Mendelian and other agronomic traits.Nature genetics · 2024Article
- Physical seed dormancy in pea is genetically separable from seed coat thickness and roughness.Frontiers in plant science · 2024Article
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- SyntenyViewer: a comparative genomics-driven translational research tool.Database : the journal of biological databases and curation · 2023Article
- Mendel: From genes to genome.Plant physiology · 2022Article
- Molecular Characterizations of theInternational journal of molecular sciences · 2022Article
- De novo super-early progeny in interspecific crosses Pisum sativum L. × P. fulvum Sibth. et Sm.Scientific reports · 2021Article
- Omics resources and omics-enabled approaches for achieving high productivity and improved quality in pea (Pisum sativum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Review
- Genome-wide association study identified candidate genes for seed size and seed composition improvement in M. truncatula.Scientific reports · 2021Article
- Identification of quantitative trait loci (QTL) controlling resistance to pea weevil (Bruchus pisorum) in a high-density integrated DArTseq SNP-based genetic map of pea.Scientific reports · 2020Article
- Analysis and Identification of QTL for Resistance toFrontiers in genetics · 2020Article
- Development of gene-based molecular markers tagging low alkaloid pauper locus in white lupin (Lupinus albus L.).Journal of applied genetics · 2019Article
- Two NovelInternational journal of molecular sciences · 2019Article
- Towards Exploitation of Adaptive Traits for Climate-Resilient Smart Pulses.International journal of molecular sciences · 2019Review
- Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA.Genome biology · 2019Article
- Construction of high-density linkage maps for mapping quantitative trait loci for multiple traits in field pea (Pisum sativum L.).BMC plant biology · 2018Article
- A High-Density Integrated DArTseq SNP-Based Genetic Map ofFrontiers in plant science · 2018Article
- High-Throughput RNA-Seq Data Analysis of the Single Nucleotide Polymorphisms (SNPs) and Zygomorphic Flower Development in Pea (Pisum sativum L.).International journal of molecular sciences · 2017Article
- The pea branching RMS2 gene encodes the PsAFB4/5 auxin receptor and is involved in an auxin-strigolactone regulation loop.PLoS genetics · 2017Article
Corrections and comments
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Authors and funding
13 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To identify genes involved in phenotypic traits, translational genomics from highly characterized model plants to poorly characterized crop plants provides a valuable source of markers to saturate a zone of interest as well as functionally characterized candidate genes. In this paper, an integrated view of the pea genetic map was developed. A series of gene markers were mapped and their best reciprocal homologs were identified on M. truncatula, L. japonicus, soybean, and poplar pseudomolecules. Based on the syntenic relationships uncovered between pea and M. truncatula, 5460 pea Unigenes were tentatively placed on the consensus map. A new bioinformatics tool, http://www.thelegumeportal.net/pea_mtr_translational_toolkit, was developed that allows, for any gene sequence, to search its putative position on the pea consensus map and hence to search for candidate genes among neighboring Unigenes. As an example, a promising candidate gene for the hypernodulation mutation nod3 in pea was proposed based on the map position of the likely homolog of Pub1, a M. truncatula gene involved in nodulation regulation. A broader view of pea genome evolution was obtained by revealing syntenic relationships between pea and sequenced genomes. Blocks of synteny were identified which gave new insights into the evolution of chromosome structure in Papillionoids and Eudicots. The power of the translational genomics approach was underlined.
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