Evidence map›Paper›PMID 22383961›Full record

ArticlePloS one2012

Mosaic origins of a complex chimeric mitochondrial gene in Silene vulgaris.

Helena Storchova, Karel Müller, Steffen Lau, Matthew S Olson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 3 countries.

Helena StorchovaInstitute of Experimental Botany, Academy of Sciences of the Czech Republic, Prague, Czech Republic.
Karel Müller
Steffen Lau
Matthew S Olson
University of Alaska Fairbanks · USCzech Academy of Sciences, Institute of Experimental Botany · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chimeric genes are significant sources of evolutionary innovation that are normally created when portions of two or more protein coding regions fuse to form a new open reading frame. In plant mitochondria astonishingly high numbers of different novel chimeric genes have been reported, where they are generated through processes of rearrangement and recombination. Nonetheless, because most studies do not find or report nucleotide variation within the same chimeric gene, evolution after the origination of these chimeric genes remains unstudied. Here we identify two alleles of a complex chimera in Silene vulgaris that are divergent in nucleotide sequence, genomic position relative to other mitochondrial genes, and expression patterns. Structural patterns suggest a history partially influenced by gene conversion between the chimeric gene and functional copies of subunit 1 of the mitochondrial ATP synthase gene (atp1). We identified small repeat structures within the chimeras that are likely recombination sites allowing generation of the chimera. These results establish the potential for chimeric gene divergence in different plant mitochondrial lineages within the same species. This result contrasts with the absence of diversity within mitochondrial chimeras found in crop species.

Indexed as

Genes, MitochondrialAllelesArabidopsis ProteinsBlotting, SouthernCodonCrosses, GeneticDNA PrimersEvolution, MolecularGene Expression RegulationGenes, PlantGenetic VariationGenome, PlantLikelihood FunctionsModels, GeneticMosaicismPhylogenyArabidopsis ProteinsATP1 protein, ArabidopsisCodonDNA PrimersProton-Translocating ATPasesRNA, Messenger

Identifiers

PMID22383961
PMCPMC3288002
OpenAlexW2028818272

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.