Evidence map›Paper›PMID 22383692›Full record

ArticleJournal of the American Society of Nephrology : JASN2012

Identification of gene mutations in autosomal dominant polycystic kidney disease through targeted resequencing.

Sandro Rossetti, Katharina Hopp, Robert A Sikkink, Jamie L Sundsbak, Yean Kit Lee, Vickie Kubly, Bruce W Eckloff, Christopher J Ward, Christopher G Winearls, Vicente E Torres and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 171 citations in OpenAlex.

  1. Trial
  2. Can we further enrich autosomal dominant polycystic kidney disease clinical trials for rapidly progressive patients? Application of the PROPKD score in the TEMPO trial.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2018
    Trial
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  15. Long-Read Sequencing Identified aHuman mutation · 2024
    Article
  16. Article
  17. Review
  18. Mechanisms of Cyst Development in Polycystic Kidney Disease.Advances in kidney disease and health · 2023
    Review
  19. Article
  20. Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Sandro RossettiDivision of Nephrology and Hypertension, Mayo Clinic, Rochester, MN 55905, USA. rossetti.sandro@mayo.edu
Katharina Hopp
Robert A Sikkink
Jamie L Sundsbak
Yean Kit Lee
Vickie Kubly
Bruce W Eckloff
Christopher J Ward
Christopher G Winearls
Vicente E Torres
Peter C Harris
Hypertension Institute · USMayo Clinic · USUniversity of Oxford · GB

Funding

Pilot and FeasibilityP30DK090728 · NIDDK · MAYO CLINIC ROCHESTER · PI ROMERO, MICHAEL F. · 2010 to 2019
$11.8M
ADPKD:Disease Spectrum &Genotype-Phenotype CorrelationsR01DK058816 · NIDDK · MAYO CLINIC ROCHESTER · PI Peter C. Harris · 2001 to 2026
$11.3M
RENIN ANGIOTENSIN SYSTEM IN THE PATHOGENESIS OF ADPKDR01DK044863 · NIDDK · MAYO CLINIC ROCHESTER · PI TORRES, VICENTE E · 1991 to 2019
$4.5M
Mutations detection and classification in ADPKDR21DK083669 · NIDDK · MAYO CLINIC ROCHESTER · PI HARRIS, PETER C. · 2010 to 2011
$432k
NIDDK NIH HHS P30 DK090728NIDDK NIH HHS P30DK090728NIDDK NIH HHS R01 DK044863NIDDK NIH HHS R01 DK058816NIDDK NIH HHS R01DK58816NIDDK NIH HHS R21 DK083669NIDDK NIH HHS R21DK083669
6 · The paper itself

Abstract

Mutations in two large multi-exon genes, PKD1 and PKD2, cause autosomal dominant polycystic kidney disease (ADPKD). The duplication of PKD1 exons 1-32 as six pseudogenes on chromosome 16, the high level of allelic heterogeneity, and the cost of Sanger sequencing complicate mutation analysis, which can aid diagnostics of ADPKD. We developed and validated a strategy to analyze both the PKD1 and PKD2 genes using next-generation sequencing by pooling long-range PCR amplicons and multiplexing bar-coded libraries. We used this approach to characterize a cohort of 230 patients with ADPKD. This process detected definitely and likely pathogenic variants in 115 (63%) of 183 patients with typical ADPKD. In addition, we identified atypical mutations, a gene conversion, and one missed mutation resulting from allele dropout, and we characterized the pattern of deep intronic variation for both genes. In summary, this strategy involving next-generation sequencing is a model for future genetic characterization of large ADPKD populations.

Indexed as

MutationElectronic Data ProcessingHumansPolycystic Kidney, Autosomal DominantPolymerase Chain ReactionSequence Analysis, DNATRPP Cation ChannelsTRPP Cation Channels

Identifiers

PMID22383692
PMCPMC3338301
OpenAlexW2116444145

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.