Evidence map›Paper›PMID 22383540›Full record

ArticlePlant physiology2012

The U-Box/ARM E3 ligase PUB13 regulates cell death, defense, and flowering time in Arabidopsis.

Wei Li, Il-Pyung Ahn, Yuese Ning, Chan-Ho Park, Lirong Zeng, Justin G A Whitehill, Haibin Lu, Qingzhen Zhao, Bo Ding, Qi Xie and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
21.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 148 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Study on Genetic Transformation System of Cabbage (Plants (Basel, Switzerland) · 2025
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  8. TheFrontiers in plant science · 2025
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  9. Article
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  13. Article
  14. Frontiers in microbiology · 2023
    Article
  15. GIGANTEA regulatesPlant signaling & behavior · 2022
    Article
  16. How Many Faces Does the Plant U-Box E3 Ligase Have?International journal of molecular sciences · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Interaction ofFrontiers in plant science · 2021
    Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 2 countries.

Wei LiHunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization and Hunan Provincial Key Laboratory of Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha, Hunan 410128, China.
Il-Pyung Ahn
Yuese Ning
Chan-Ho Park
Lirong Zeng
Justin G A Whitehill
Haibin Lu
Qingzhen Zhao
Bo Ding
Qi Xie
Jian-Min Zhou
Liangying Dai
Guo-Liang Wang
Hunan Academy of Agricultural Sciences · CNInstitute of Genetics and Developmental Biology · CNThe Ohio State University · USUniversity of Arkansas at Little Rock · USChinese Academy of Agricultural Sciences · CNHunan Agricultural University · CNInstitute of Plant Protection · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The components in plant signal transduction pathways are intertwined and affect each other to coordinate plant growth, development, and defenses to stresses. The role of ubiquitination in connecting these pathways, particularly plant innate immunity and flowering, is largely unknown. Here, we report the dual roles for the Arabidopsis (Arabidopsis thaliana) Plant U-box protein13 (PUB13) in defense and flowering time control. In vitro ubiquitination assays indicated that PUB13 is an active E3 ubiquitin ligase and that the intact U-box domain is required for the E3 ligase activity. Disruption of the PUB13 gene by T-DNA insertion results in spontaneous cell death, the accumulation of hydrogen peroxide and salicylic acid (SA), and elevated resistance to biotrophic pathogens but increased susceptibility to necrotrophic pathogens. The cell death, hydrogen peroxide accumulation, and resistance to necrotrophic pathogens in pub13 are enhanced when plants are pretreated with high humidity. Importantly, pub13 also shows early flowering under middle- and long-day conditions, in which the expression of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 and FLOWERING LOCUS T is induced while FLOWERING LOCUS C expression is suppressed. Finally, we found that two components involved in the SA-mediated signaling pathway, SID2 and PAD4, are required for the defense and flowering-time phenotypes caused by the loss of function of PUB13. Taken together, our data demonstrate that PUB13 acts as an important node connecting SA-dependent defense signaling and flowering time regulation in Arabidopsis.

Indexed as

ArabidopsisArabidopsis ProteinsBotrytisCarboxylic Ester HydrolasesCell DeathCloning, MolecularEnzyme ActivationEnzyme AssaysFlowersGene Expression Regulation, PlantGenes, PlantHumidityHydrogen PeroxideMADS Domain ProteinsPlant DiseasesPlant ImmunityAGL20 protein, ArabidopsisArabidopsis ProteinsAt5g10140 protein, ArabidopsisCarboxylic Ester HydrolasesHydrogen PeroxideMADS Domain ProteinsPAD4 protein, ArabidopsisPUB13 protein, ArabidopsisSalicylatesUbiquitin-Protein Ligases

Identifiers

PMID22383540
PMCPMC3366716
OpenAlexW2122672983

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.