Evidence map›Paper›PMID 22383526›Full record

ArticleThe Journal of biological chemistry2012

Yeast mitochondrial leucyl-tRNA synthetase CP1 domain has functionally diverged to accommodate RNA splicing at expense of hydrolytic editing.

Jaya Sarkar, Kiranmai Poruri, Michal T Boniecki, Katherine K McTavish, Susan A Martinis

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Moonlighting Proteins: Diverse Functions Found in Fungi.Journal of fungi (Basel, Switzerland) · 2023
    Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Error-prone protein synthesis in parasites with the smallest eukaryotic genome.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. RNA (New York, N.Y.) · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Emergence and evolution.Topics in current chemistry · 2014
    Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jaya SarkarDepartment of Biochemistry, University of Illinois Urbana-Champaign, Urbana, Illinois 61801, USA.
Kiranmai Poruri
Michal T Boniecki
Katherine K McTavish
Susan A Martinis

Funding

tRNA Synthetase Fidelity MechanismsR01GM063789 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MARTINIS, SUSAN A · 2001 to 2014
$3.3M
Leucyl-tRNA Synthetase Assisted Splicing MechanismsR01GM063107 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI MARTINIS, SUSAN A · 2001 to 2005
$1.1M
NIGMS NIH HHS GM063789NIGMS NIH HHS GM63107NIGMS NIH HHS R01 GM063107NIGMS NIH HHS R01 GM063789
6 · The paper itself

Abstract

The yeast mitochondrial leucyl-tRNA synthetase (ymLeuRS) performs dual essential roles in group I intron splicing and protein synthesis. A specific LeuRS domain called CP1 is responsible for clearing noncognate amino acids that are misactivated during aminoacylation. The ymLeuRS CP1 domain also plays a critical role in splicing. Herein, the ymLeuRS CP1 domain was isolated from the full-length enzyme and was active in RNA splicing in vitro. Unlike its Escherichia coli LeuRS CP1 domain counterpart, it failed to significantly hydrolyze misaminoacylated tRNA(Leu). In addition and in stark contrast to the yeast domain, the editing-active E. coli LeuRS CP1 domain failed to recapitulate the splicing activity of the full-length E. coli enzyme. Although LeuRS-dependent splicing activity is rooted in an ancient adaptation for its aminoacylation activity, these results suggest that the ymLeuRS has functionally diverged to confer a robust splicing activity. This adaptation could have come at some expense to the protein's housekeeping role in aminoacylation and editing.

Indexed as

Amino Acyl-tRNA SynthetasesMitochondrial ProteinsProtein Structure, TertiaryRNARNA EditingRNA, FungalRNA, MessengerRNA, MitochondrialRNA SplicingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmino Acyl-tRNA SynthetasesMitochondrial ProteinsRNARNA, FungalRNA, MessengerRNA, MitochondrialSaccharomyces cerevisiae Proteins

Identifiers

PMID22383526
PMCPMC3340235

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.