Evidence map›Paper›PMID 22380711›Full record

ArticleJournal of medicinal chemistry2012

Identification of novel antimalarial chemotypes via chemoinformatic compound selection methods for a high-throughput screening program against the novel malarial target, PfNDH2: increasing hit rate via virtual screening methods.

Raman Sharma, Alexandre S Lawrenson, Nicholas E Fisher, Ashley J Warman, Alison E Shone, Alasdair Hill, Alison Mbekeani, Chandrakala Pidathala, Richard K Amewu, Suet Leung and 13 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Raman SharmaRobert Robinson Laboratories, Department of Chemistry, University of Liverpool, Liverpool L69 7ZD, United Kingdom.
Alexandre S Lawrenson
Nicholas E Fisher
Ashley J Warman
Alison E Shone
Alasdair Hill
Alison Mbekeani
Chandrakala Pidathala
Richard K Amewu
Suet Leung
Peter Gibbons
David W Hong
Paul Stocks
Gemma L Nixon
James Chadwick
Joanne Shearer
Ian Gowers
David Cronk
Serge P Parel
Paul M O'Neill
Stephen A Ward
Giancarlo A Biagini
Neil G Berry

Funding

Wellcome Trust
6 · The paper itself

Abstract

Malaria is responsible for approximately 1 million deaths annually; thus, continued efforts to discover new antimalarials are required. A HTS screen was established to identify novel inhibitors of the parasite's mitochondrial enzyme NADH:quinone oxidoreductase (PfNDH2). On the basis of only one known inhibitor of this enzyme, the challenge was to discover novel inhibitors of PfNDH2 with diverse chemical scaffolds. To this end, using a range of ligand-based chemoinformatics methods, ~17000 compounds were selected from a commercial library of ~750000 compounds. Forty-eight compounds were identified with PfNDH2 enzyme inhibition IC(50) values ranging from 100 nM to 40 μM and also displayed exciting whole cell antimalarial activity. These novel inhibitors were identified through sampling 16% of the available chemical space, while only screening 2% of the library. This study confirms the added value of using multiple ligand-based chemoinformatic approaches and has successfully identified novel distinct chemotypes primed for development as new agents against malaria.

Indexed as

Databases, FactualQuantitative Structure-Activity RelationshipAntimalarialsBayes TheoremHigh-Throughput Screening AssaysInformaticsParasitic Sensitivity TestsPlasmodium falciparumPrincipal Component AnalysisProtozoan ProteinsQuinone ReductasesAntimalarialsNADH dehydrogenase (quinone)Protozoan ProteinsQuinone Reductases

Identifiers

PMID22380711
PMCPMC3324984

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.