Evidence map›Paper›PMID 22379133›Full record

ArticleNucleic acids research2012

Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress.

Géraldine Servant, Benoit Pinson, Aurélie Tchalikian-Cosson, Fanny Coulpier, Sophie Lemoine, Carole Pennetier, Antoine Bridier-Nahmias, Anne Laure Todeschini, Hélène Fayol, Bertrand Daignan-Fornier and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  6. Review
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  10. Crystal structure of the complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  11. Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Géraldine ServantCNRS UPR9073, associated with Univ Paris Diderot, Sorbonne Paris Cité, Institut de Biologie Physico-chimique, F-75005 Paris, France.
Benoit Pinson
Aurélie Tchalikian-Cosson
Fanny Coulpier
Sophie Lemoine
Carole Pennetier
Antoine Bridier-Nahmias
Anne Laure Todeschini
Hélène Fayol
Bertrand Daignan-Fornier
Pascale Lesage

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements play a fundamental role in genome evolution. It is proposed that their mobility, activated under stress, induces mutations that could confer advantages to the host organism. Transcription of the Ty1 LTR-retrotransposon of Saccharomyces cerevisiae is activated in response to a severe deficiency in adenylic nucleotides. Here, we show that Ty2 and Ty3 are also stimulated under these stress conditions, revealing the simultaneous activation of three active Ty retrotransposon families. We demonstrate that Ty1 activation in response to adenylic nucleotide depletion requires the DNA-binding transcription factor Tye7. Ty1 is transcribed in both sense and antisense directions. We identify three Tye7 potential binding sites in the region of Ty1 DNA sequence where antisense transcription starts. We show that Tye7 binds to Ty1 DNA and regulates Ty1 antisense transcription. Altogether, our data suggest that, in response to adenylic nucleotide reduction, TYE7 is induced and activates Ty1 mRNA transcription, possibly by controlling Ty1 antisense transcription. We also provide the first evidence that Ty1 antisense transcription can be regulated by environmental stress conditions, pointing to a new level of control of Ty1 activity by stress, as Ty1 antisense RNAs play an important role in regulating Ty1 mobility at both the transcriptional and post-transcriptional stages.

Indexed as

Gene Expression Regulation, FungalRetroelementsAdenineAdenosine DiphosphateAdenosine TriphosphateGene DeletionRNA, AntisenseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalTrans-ActivatorsTranscriptional ActivationTranscriptomeAdenineAdenosine DiphosphateAdenosine TriphosphateBAS1 protein, S cerevisiaeRetroelementsRNA, AntisenseSaccharomyces cerevisiae ProteinsTrans-ActivatorsTYE7 protein, S cerevisiae

Identifiers

PMID22379133
PMCPMC3384299

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.