Evidence map›Paper›PMID 22378778›Full record

ArticleThe Journal of biological chemistry2012

PpsR, a regulator of heme and bacteriochlorophyll biosynthesis, is a heme-sensing protein.

Liang Yin, Vladimira Dragnea, Carl E Bauer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. The blue light-dependent LOV-protein LdaP ofFrontiers in microbiology · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. SpyB, a Small Heme-Binding Protein, Affects the Composition of the Cell Wall inFrontiers in cellular and infection microbiology · 2016
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Multi-PAS domain-mediated protein oligomerization of PpsR from Rhodobacter sphaeroides.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  12. Article
  13. Article
  14. Controlling the delicate balance of tetrapyrrole biosynthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  15. Article
  16. Article
  17. Heme sensor proteins.The Journal of biological chemistry · 2013
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Liang YinDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana 47405, USA.
Vladimira Dragnea
Carl E Bauer
Indiana University Bloomington · US

Funding

Prokaryotic gene regulation by light and oxygenR37GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 2006 to 2016
$5.4M
PROKARYOTIC GENE REGULATION BY LIGHT AND OXYGENR01GM040941 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BAUER, CARL EUGENE · 1994 to 2020
$3.3M
NIGMS NIH HHS R01 GM040941NIGMS NIH HHS R37 GM040941
6 · The paper itself

Abstract

Heme-mediated regulation, presented in many biological processes, is achieved in part with proteins containing heme regulatory motif. In this study, we demonstrate that FLAG-tagged PpsR isolated from Rhodobacter sphaeroides cells contains bound heme. In vitro heme binding studies with tagless apo-PpsR show that PpsR binds heme at a near one-to-one ratio with a micromolar binding constant. Mutational and spectral assays suggest that both the second Per-Arnt-Sim (PAS) and DNA binding domains of PpsR are involved in the heme binding. Furthermore, we show that heme changes the DNA binding patterns of PpsR and induces different responses of photosystem genes expression. Thus, PpsR functions as both a redox and heme sensor to coordinate the amount of heme, bacteriochlorophyll, and photosystem apoprotein synthesis thereby providing fine tune control to avoid excess free tetrapyrrole accumulation.

Indexed as

BacteriochlorophyllsDeoxyribonuclease IDNADNA-Binding ProteinsEscherichia coliGene Expression RegulationHemeIronLigandsMolecular ConformationPhotosynthesisProtein BindingProtein Structure, TertiaryProteobacteriaRhodobacter sphaeroidesTetrapyrrolesBacteriochlorophyllsDeoxyribonuclease IDNADNA-Binding ProteinsHemeIronLigandsTetrapyrrolesTryptophan

Identifiers

PMID22378778
PMCPMC3340169
OpenAlexW2060261901

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.