Evidence map›Paper›PMID 22377630›Full record

ArticleGenetics2012

Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae.

Kristan K Steffen, Mark A McCormick, Kim M Pham, Vivian L MacKay, Joe R Delaney, Christopher J Murakami, Matt Kaeberlein, Brian K Kennedy

Abstract read
In one paragraph

Article in Genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed, 1 pooled it
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 1 synthesis or guideline pooled it, 188 citations in OpenAlex.

  1. Pooled it
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  14. Ribosome Structural Changes Dynamically Affect Ribosome Function.International journal of molecular sciences · 2024
    Review
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81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kristan K SteffenDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Mark A McCormick
Kim M Pham
Vivian L MacKay
Joe R Delaney
Christopher J Murakami
Matt Kaeberlein
Brian K Kennedy
University of Washington · US

Funding

GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
TOR, Translation and AgingR01AG033373 · NIA · UNIVERSITY OF WASHINGTON · PI KENNEDY, BRIAN K · 2009 to 2013
$1.8M
Genome-wide Analysis of Aging in YeastR01AG025549 · NIA · UNIVERSITY OF WASHINGTON · PI KENNEDY, BRIAN K · 2006 to 2010
$1.5M
NIA NIH HHS R01 AG025549NIA NIH HHS R01AG025549NIA NIH HHS R01 AG033373NIA NIH HHS R01AG033373NIA NIH HHS T32 AG000057NIA NIH HHS T32AG00057
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, 59 of the 78 ribosomal proteins are encoded by duplicated genes that, in most cases, encode identical or very similar protein products. However, different sets of ribosomal protein genes have been identified in screens for various phenotypes, including life span, budding pattern, and drug sensitivities. Due to potential suppressors of growth rate defects among this set of strains in the ORF deletion collection, we regenerated the entire set of haploid ribosomal protein gene deletion strains in a clean genetic background. The new strains were used to create double deletions lacking both paralogs, allowing us to define a set of 14 nonessential ribosomal proteins. Replicative life-span analysis of new strains corresponding to ORF deletion collection strains that likely carried suppressors of growth defects identified 11 new yeast replicative aging genes. Treatment of the collection of ribosomal protein gene deletion strains with tunicamycin revealed a significant correlation between slow growth and resistance to ER stress that was recapitulated by reducing translation of wild-type yeast with cycloheximide. Interestingly, enhanced tunicamycin resistance in ribosomal protein gene deletion mutants was independent of the unfolded protein response transcription factor Hac1. These data support a model in which reduced translation is protective against ER stress by a mechanism distinct from the canonical ER stress response pathway and further add to the diverse yet specific phenotypes associated with ribosomal protein gene deletions.

Indexed as

Gene DeletionCycloheximideEndoplasmic Reticulum StressHaploidyRibosomal ProteinsRibosomesSaccharomyces cerevisiaeTime FactorsCycloheximideRibosomal Proteins

Identifiers

PMID22377630
PMCPMC3338253
OpenAlexW2065399087

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.