Evidence map›Paper›PMID 22375072›Full record

ArticlemBio2012

Genetic reporter system for positioning of proteins at the bacterial pole.

Kathryn R Fixen, Anuradha Janakiraman, Sean Garrity, Daniel J Slade, Andrew N Gray, Nilay Karahan, Ann Hochschild, Marcia B Goldberg

Open access · goldAbstract read
In one paragraph

Article in mBio, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Roles for theJournal of biological rhythms · 2023
    Article
  3. Article
  4. Molecular and Cellular Mechanisms of Shigella flexneri Dissemination.Frontiers in cellular and infection microbiology · 2016
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kathryn R FixenDepartment of Microbiology and Molecular Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Anuradha Janakiraman
Sean Garrity
Daniel J Slade
Andrew N Gray
Nilay Karahan
Ann Hochschild
Marcia B Goldberg
Harvard University · USMassachusetts General Hospital · US

Funding

INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
MECHANISM AND FUNCTION OF UNIPOLARITY OF SHIGELLA ICSAR01AI035817 · NIAID · YESHIVA UNIVERSITY · PI GOLDBERG, MARCIA B · 1994 to 2009
$3.9M
A new genetic approach for studying prions and other pathogenic protein aggregateDP1OD003806 · OD · HARVARD MEDICAL SCHOOL · PI HOCHSCHILD, ANN · 2008 to 2011
$3.4M
A new genetic approach for studying prions and other pathogenic protein aggregateDP1AI104284 · NIAID · HARVARD MEDICAL SCHOOL · PI HOCHSCHILD, ANN · 2012 to 2012
$839k
NIAID NIH HHS DP1 AI104284NIAID NIH HHS R01 AI035817NIAID NIH HHS T32 AI007061NIH HHS DP1 OD003806
6 · The paper itself

Abstract

unlabelledSpatial organization within bacteria is fundamental to many cellular processes, although the basic mechanisms underlying localization of proteins to specific sites within bacteria are poorly understood. The study of protein positioning has been limited by a paucity of methods that allow rapid large-scale screening for mutants in which protein positioning is altered. We developed a genetic reporter system for protein localization to the pole within the bacterial cytoplasm that allows saturation screening for mutants in Escherichia coli in which protein localization is altered. Utilizing this system, we identify proteins required for proper positioning of the Shigella autotransporter IcsA. Autotransporters, widely distributed bacterial virulence proteins, are secreted at the bacterial pole. We show that the conserved cell division protein FtsQ is required for localization of IcsA and other autotransporters to the pole. We demonstrate further that this system can be applied to the study of proteins other than autotransporters that display polar positioning within bacterial cells. IMPORTANCE: Many proteins localize to specific sites within bacterial cells, and localization to these sites is frequently critical to proper protein function. The mechanisms that underlie protein localization are incompletely understood, in part because of the paucity of methods that allow saturation screening for mutants in which protein localization is altered. We developed a genetic reporter assay that enables screening of bacterial populations for changes in localization of proteins to the bacterial pole, and we demonstrate the utility of the system in identifying factors required for proper localization of the polar Shigella autotransporter protein IcsA. Using this method, we identify the conserved cell division protein FtsQ as being required for positioning of IcsA to the bacterial pole. We demonstrate further that the requirement for FtsQ for polar positioning applies to other autotransporters and that the method can be applied to polar proteins other than autotransporters.

Indexed as

Genes, ReporterBacterial ProteinsDNA-Binding ProteinsDNA Transposable ElementsEscherichia coliEscherichia coli ProteinsGenetics, MicrobialMembrane ProteinsMutagenesis, InsertionalProtein TransportShigellaTranscription FactorsBacterial ProteinsDNA-Binding ProteinsDNA Transposable ElementsEscherichia coli ProteinsFtsQ protein, E coliMembrane ProteinsTranscription FactorsvirG protein, Shigella flexneri

Identifiers

PMID22375072
PMCPMC3302567
OpenAlexW2010001605

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.