Evidence map›Paper›PMID 22374910›Full record

ArticleProtein science : a publication of the Protein Society2012

Formyl-coenzyme A (CoA):oxalate CoA-transferase from the acidophile Acetobacter aceti has a distinctive electrostatic surface and inherent acid stability.

Elwood A Mullins, Courtney M Starks, Julie A Francois, Lee Sael, Daisuke Kihara, T Joseph Kappock

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Elwood A MullinsDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA.
Courtney M Starks
Julie A Francois
Lee Sael
Daisuke Kihara
T Joseph Kappock
Purdue University West Lafayette · USWashington University in St. Louis · US

Funding

Surface Shape Based Screening of Large Protein DatabasesR01GM075004 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI KIHARA, DAISUKE · 2005 to 2009
$1.5M
Identification of protein-metabolite interactome.R01GM097528 · NIGMS · PURDUE UNIVERSITY · PI KIHARA, DAISUKE · 2011 to 2014
$1.1M
HISTONE H3 PHOSPHORYLATION DURING ENZYME INDUCTIONF32GM009752 · NIGMS · NORTHWESTERN UNIVERSITY · PI SQUINTO, STEPHEN P · 1985 to 1985
–
NIGMS NIH HHS GM075004NIGMS NIH HHS GM09752NIGMS NIH HHS R01 GM097528
6 · The paper itself

Abstract

Bacterial formyl-CoA:oxalate CoA-transferase (FCOCT) and oxalyl-CoA decarboxylase work in tandem to perform a proton-consuming decarboxylation that has been suggested to have a role in generalized acid resistance. FCOCT is the product of uctB in the acidophilic acetic acid bacterium Acetobacter aceti. As expected for an acid-resistance factor, UctB remains folded at the low pH values encountered in the A. aceti cytoplasm. A comparison of crystal structures of FCOCTs and related proteins revealed few features in UctB that would distinguish it from nonacidophilic proteins and thereby account for its acid stability properties, other than a strikingly featureless electrostatic surface. The apparently neutral surface is a result of a "speckled" charge decoration, in which charged surface residues are surrounded by compensating charges but do not form salt bridges. A quantitative comparison among orthologs identified a pattern of residue substitution in UctB that may be a consequence of selection for protein stability by constant exposure to acetic acid. We suggest that this surface charge pattern, which is a distinctive feature of A. aceti proteins, creates a stabilizing electrostatic network without stiffening the protein or compromising protein-solvent interactions.

Indexed as

Acetic AcidAcetobacterBacterial ProteinsCoenzyme A-TransferasesEthanolHydrogen-Ion ConcentrationModels, MolecularProtein StabilityStatic ElectricitySubstrate SpecificityAcetic AcidBacterial ProteinsCoenzyme A-TransferasesEthanolformyl-coenzyme A transferase

Identifiers

PMID22374910
PMCPMC3403466
OpenAlexW2154382135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.