ArticleDatabase : the journal of biological databases and curation2012
GrameneMart: the BioMart data portal for the Gramene project.
Article in Database : the journal of biological databases and curation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
18 citing papers in PubMed.
- Using knowledge graphs to infer gene expression in plants.Frontiers in artificial intelligence · 2023Article
- Gene Ontology Meta Annotator for Plants (GOMAP).Plant methods · 2021Article
- Gramene 2018: unifying comparative genomics and pathway resources for plant research.Nucleic acids research · 2018Article
- Comprehensive survey and evolutionary analysis of genome-wide miRNA genes from ten diploid Oryza species.BMC genomics · 2017Article
- Gramene Database: Navigating Plant Comparative Genomics Resources.Current plant biology · 2016Article
- Gramene 2016: comparative plant genomics and pathway resources.Nucleic acids research · 2016Article
- The BioMart community portal: an innovative alternative to large, centralized data repositories.Nucleic acids research · 2015Article
- MOROKOSHI: transcriptome database in Sorghum bicolor.Plant & cell physiology · 2015Article
- FASCIATED EAR4 encodes a bZIP transcription factor that regulates shoot meristem size in maize.The Plant cell · 2015Article
- The bimodal distribution of genic GC content is ancestral to monocot species.Genome biology and evolution · 2014Article
- POEAS: Automated Plant Phenomic Analysis Using Plant Ontology.Bioinformatics and biology insights · 2014Article
- Gramene 2013: comparative plant genomics resources.Nucleic acids research · 2014Article
- WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks.Rice (New York, N.Y.) · 2013Article
- Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae).Applications in plant sciences · 2013Article
- STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.Plant & cell physiology · 2013Article
- Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots.PloS one · 2013Article
- BioMart: a data federation framework for large collaborative projects.Database : the journal of biological databases and curation · 2011Article
- BioMart Central Portal: an open database network for the biological community.Database : the journal of biological databases and curation · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Gramene is a well-established resource for plant comparative genome analysis. Data are generated through automated and curated analyses and made available through web interfaces such as GrameneMart. The Gramene project was an early adopter of the BioMart software, which remains an integral and well-used component of the Gramene website. BioMart accessible data sets include plant gene annotations, plant variation catalogues, genetic markers, physical mapping entities, public DNA/mRNA sequences of various types and curated quantitative trait loci for various species. DATABASE URL: http://www.gramene.org/biomart/martview.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.