Evidence map›Paper›PMID 22373923›Full record

ArticleNucleic acids research2012

Co-evolution of segregation guide DNA motifs and the FtsK translocase in bacteria: identification of the atypical Lactococcus lactis KOPS motif.

Sophie Nolivos, Fabrice Touzain, Carine Pages, Michele Coddeville, Philippe Rousseau, Meriem El Karoui, Pascal Le Bourgeois, François Cornet

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Sophie NolivosLaboratoire de Microbiologie et de Génétique Moléculaire, CNRS, Université de Toulouse, Université Paul Sabatier, F-31000, Toulouse, France.
Fabrice Touzain
Carine Pages
Michele Coddeville
Philippe Rousseau
Meriem El Karoui
Pascal Le Bourgeois
François Cornet
Centre National de la Recherche Scientifique · FRLaboratoire de Microbiologie et Génétique Moléculaires · FRMicrobiologie de l’alimentation au service de la santé · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria use the global bipolarization of their chromosomes into replichores to control the dynamics and segregation of their genome during the cell cycle. This involves the control of protein activities by recognition of specific short DNA motifs whose orientation along the chromosome is highly skewed. The KOPS motifs act in chromosome segregation by orienting the activity of the FtsK DNA translocase towards the terminal replichore junction. KOPS motifs have been identified in γ-Proteobacteria and in Bacillus subtilis as closely related G-rich octamers. We have identified the KOPS motif of Lactococcus lactis, a model bacteria of the Streptococcaceae family harbouring a compact and low GC% genome. This motif, 5'-GAAGAAG-3, was predicted in silico using the occurrence and skew characteristics of known KOPS motifs. We show that it is specifically recognized by L. lactis FtsK in vitro and controls its activity in vivo. L. lactis KOPS is thus an A-rich heptamer motif. Our results show that KOPS-controlled chromosome segregation is conserved in Streptococcaceae but that KOPS may show important variation in sequence and length between bacterial families. This suggests that FtsK adapts to its host genome by selecting motifs with convenient occurrence frequencies and orientation skews to orient its activity.

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceBacterial ProteinsBinding SitesChromosomes, BacterialDNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsEvolution, MolecularLactococcus lactisMembrane ProteinsMolecular Sequence DataNucleotide MotifsProtein MultimerizationProtein TransportSequence AlignmentAdenosine TriphosphatasesBacterial ProteinsDNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsFtsK protein, E coliMembrane Proteins

Identifiers

PMID22373923
PMCPMC3384302
OpenAlexW2138884105

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.