Evidence map›Paper›PMID 22373576›Full record

ArticleThe EMBO journal2012

Highly diverse TCRα chain repertoire of pre-immune CD8⁺ T cells reveals new insights in gene recombination.

Raphael Genolet, Brian J Stevenson, Laurent Farinelli, Magne Osterås, Immanuel F Luescher

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Methods for Study of Mouse T Cell Receptor α and β Gene Rearrangements.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. αβ T cell receptors as predictors of health and disease.Cellular & molecular immunology · 2015
    Review
  8. Duality of the murine CD8 compartment.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  9. Article
  10. Review
  11. Review
  12. CTLA-4 controls the thymic development of both conventional and regulatory T cells through modulation of the TCR repertoire.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Article
  14. Review
  15. Article
  16. Equal opportunity for all.The EMBO journal · 2012
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Raphael GenoletLudwig Centre for Cancer Research, University of Lausanne, Epalinges, Switzerland.
Brian J Stevenson
Laurent Farinelli
Magne Osterås
Immanuel F Luescher
L.A.C. (Switzerland) · CHUniversity of Lausanne · CHLudwig Cancer Research · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although the T-cell receptor αδ (TCRαδ) locus harbours large libraries of variable (TRAV) and junctional (TRAJ) gene segments, according to previous studies the TCRα chain repertoire is of limited diversity due to restrictions imposed by sequential coordinate TRAV-TRAJ recombinations. By sequencing tens of millions of TCRα chain transcripts from naive mouse CD8(+) T cells, we observed a hugely diverse repertoire, comprising nearly all possible TRAV-TRAJ combinations. Our findings are not compatible with sequential coordinate gene recombination, but rather with a model in which contraction and DNA looping in the TCRαδ locus provide equal access to TRAV and TRAJ gene segments, similarly to that demonstrated for IgH gene recombination. Generation of the observed highly diverse TCRα chain repertoire necessitates deletion of failed attempts by thymic-positive selection and is essential for the formation of highly diverse TCRαβ repertoires, capable of providing good protective immunity.

Indexed as

Gene Rearrangement, alpha-Chain T-Cell Antigen ReceptorGenes, T-Cell Receptor alphaAnimalsBase SequenceCD8-Positive T-LymphocytesMiceMice, Inbred C57BLMolecular Sequence DataRecombination, Genetic

Identifiers

PMID22373576
PMCPMC3321212
OpenAlexW2166712566

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.