Evidence map›Paper›PMID 22372664›Full record

ArticleCellular microbiology2012

Activation of a plant nucleotide binding-leucine rich repeat disease resistance protein by a modified self protein.

Brody J DeYoung, Dong Qi, Sang-Hee Kim, Thomas P Burke, Roger W Innes

Open access · greenAbstract read
In one paragraph

Article in Cellular microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. ZAR1: Guardian of plant kinases.Frontiers in plant science · 2022
    Review
  12. An Ancestry Perspective of the Evolution of PBS1 Proteins in Plants.International journal of molecular sciences · 2021
    Article
  13. Review
  14. Review
  15. Nuclear Localization of HopA1Plants (Basel, Switzerland) · 2021
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Brody J DeYoungDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Dong Qi
Sang-Hee Kim
Thomas P Burke
Roger W Innes
Indiana University Bloomington · US

Funding

GENETICS OF DISEASE RESISTANCE IN ARABIDOPSIS THALIANAR01GM046451 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI INNES, ROGER W. · 1996 to 2011
$3.8M
Characterization of RPS5 activation and downstream interacting proteinsF32GM080912 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI DEYOUNG, BRODY J · 2008 to 2008
$51k
GENETICS OF DISEASE RESISTANCE IN ARABIDOPSIS THALIANAR29GM046451 · NIGMS · INDIANA UNIVERSITY BLOOMINGTON · PI INNES, ROGER W. · 1991 to 1995
–
NIGMS NIH HHS F32 GM080912NIGMS NIH HHS GM046451NIGMS NIH HHS GM080912-01A1NIGMS NIH HHS R01 GM046451
6 · The paper itself

Abstract

Nucleotide binding-leucine rich repeat (NB-LRR) proteins function as intracellular receptors for the detection of pathogens in both plants and animals. Despite their central role in innate immunity, the molecular mechanisms that govern NB-LRR activation are poorly understood. The Arabidopsis NB-LRR protein RPS5 detects the presence of the Pseudomonas syringae effector protein AvrPphB by monitoring the status of the Arabidopsis protein kinase PBS1. AvrPphB is a cysteine protease that targets PBS1 for cleavage at a single site within the activation loop of PBS1. Using a transient expression system in the plant Nicotiana benthamiana and stable transgenic Arabidopsis plants we found that both PBS1 cleavage products are required to activate RPS5 and can do so in the absence of AvrPphB. We also found, however, that the requirement for cleavage of PBS1 could be bypassed simply by inserting five amino acids at the PBS1 cleavage site, which is located at the apex of the activation loop of PBS1. Activation of RPS5 did not require PBS1 kinase function, and thus RPS5 appears to sense a subtle conformational change in PBS1, rather than cleavage. This finding suggests that NB-LRR proteins may function as fine-tuned sensors of alterations in the structures of effector targets.

Indexed as

Transcriptional ActivationArabidopsisArabidopsis ProteinsBacterial ProteinsNicotianaPlant DiseasesProtein Serine-Threonine KinasesPseudomonas syringaeArabidopsis ProteinsavrPphB protein, Pseudomonas syringaeBacterial ProteinsPBS1 protein, ArabidopsisProtein Serine-Threonine KinasesRPS5 protein, Arabidopsis

Identifiers

PMID22372664
PMCPMC3371279
OpenAlexW2126598492

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.