Evidence map›Paper›PMID 22371823›Full record

ArticleWorld journal of biological chemistry2012

Knowledge acquisition, semantic text mining, and security risks in health and biomedical informatics.

Jingshan Huang, Dejing Dou, Jiangbo Dang, J Harold Pardue, Xiao Qin, Jun Huan, William T Gerthoffer, Ming Tan

Abstract read
In one paragraph

Article in World journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. The development of non-coding RNA ontology.International journal of data mining and bioinformatics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jingshan HuangJingshan Huang, J Harold Pardue, School of Computer and Information Sciences, University of South Alabama, Mobile, AL 36688, United States.
Dejing Dou
Jiangbo Dang
J Harold Pardue
Xiao Qin
Jun Huan
William T Gerthoffer
Ming Tan

Funding

Small heat shock proteins in smooth muscle plasticityR01HL077726 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI GERTHOFFER, WILLIAM T · 2005 to 2013
$2.5M
Glucose metabolism and ErbB2-mediated cancer progressionR01CA149646 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI TAN, MING · 2011 to 2016
$1.4M
NCI NIH HHS R01 CA149646NHLBI NIH HHS R01 HL077726
6 · The paper itself

Abstract

Computational techniques have been adopted in medical and biological systems for a long time. There is no doubt that the development and application of computational methods will render great help in better understanding biomedical and biological functions. Large amounts of datasets have been produced by biomedical and biological experiments and simulations. In order for researchers to gain knowledge from original data, nontrivial transformation is necessary, which is regarded as a critical link in the chain of knowledge acquisition, sharing, and reuse. Challenges that have been encountered include: how to efficiently and effectively represent human knowledge in formal computing models, how to take advantage of semantic text mining techniques rather than traditional syntactic text mining, and how to handle security issues during the knowledge sharing and reuse. This paper summarizes the state-of-the-art in these research directions. We aim to provide readers with an introduction of major computing themes to be applied to the medical and biological research.

Indexed as

BioinformaticsBiomedical informaticsHeterogeneous semanticsKnowledge sharingOntology matchingSecurity riskSemantic data miningSemantic integrationSemantic text mining

Identifiers

PMID22371823
PMCPMC3286791

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.