Evidence map›Paper›PMID 22371338›Full record

ArticleBirth defects research. Part A, Clinical and molecular teratology2012

Strain-specific modifier genes governing craniofacial phenotypes.

Partha Mukhopadhyay, Guy Brock, Cynthia Webb, M Michele Pisano, Robert M Greene

Open access · greenAbstract read
In one paragraph

Article in Birth defects research. Part A, Clinical and molecular teratology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Partha MukhopadhyayUniversity of Louisville Birth Defects Center, Department of Molecular, Cellular and Craniofacial Biology, ULSD, University of Louisville, Louisville, Kentucky 40292, USA.
Guy Brock
Cynthia Webb
M Michele Pisano
Robert M Greene
University of Louisville · US

Funding

U-SHAPED DEVELOPMENT IN INFANT COGNITION AND PERCEPTIONP20RR017702 · NCRR · UNIVERSITY OF LOUISVILLE · PI PISANO, M. MICHELE · 2002 to 2011
$15.0M
Transcriptional Coactivators and Pregnancy OutcomesR01HD053509 · NICHD · UNIVERSITY OF LOUISVILLE · PI GREENE, ROBERT M · 2008 to 2012
$1.5M
NUTRITIONAL EPIGENETICS AND OROFACIAL DEVELOPMENTR01DE018215 · NIDCR · UNIVERSITY OF LOUISVILLE · PI GREENE, ROBERT M · 2008 to 2011
$1.3M
Response Signatures of Alcohol-Related Birth DefectsR01AA013205 · NIAAA · UNIVERSITY OF LOUISVILLE · PI KNUDSEN, THOMAS B · 2001 to 2003
$942k
Developmental Cigarette Smoke Exposure: Biomarkers of NeurotoxicityR21DA027466 · NIDA · UNIVERSITY OF LOUISVILLE · PI NEAL, RACHEL ELIZABETH, PISANO, M. MICHELE · 2009 to 2011
$583k
Response Signatures of Alcohol-Related Birth DefectsR56AA013205 · NIAAA · UNIVERSITY OF LOUISVILLE · PI PISANO, M. MICHELE · 2007 to 2007
$300k
NCRR NIH HHS P20 RR017702NIAAA NIH HHS R01 AA013205NIAAA NIH HHS R56 AA013205NICHD NIH HHS HD053509NICHD NIH HHS R01 HD053509NIDA NIH HHS DA027466NIDA NIH HHS R21 DA027466NIDCR NIH HHS DE018215NIDCR NIH HHS R01 DE018215
6 · The paper itself

Abstract

backgroundThe presence of strain-specific modifier genes is known to modulate the phenotype and pathophysiology of mice harboring genetically engineered mutations. Thus, identification of genetic modifier genes is requisite to understanding control of phenotypic expression. c-Ski is a transcriptional regulator. Ski(-/-) mice on a C57BL6J (B6) background exhibit facial clefting, while Ski(-/-) mice on a 129P3 (129) background present with exencephaly.

methodsIn the present study, oligonucleotide-based gene expression profiling was used to identify potential strain-specific modifier gene candidates present in wild type mice of B6 and 129 genetic backgrounds. Changes in gene expression were verified by TaqMan quantitative real-time PCR.

resultsSteady-state levels of 89 genes demonstrated a significantly higher level of expression, and those of 68 genes demonstrated a significantly lower level of expression in the developing neural tubes from embryonic day (E) 8.5, B6 embryos when compared to expression levels in neural tubes derived from E 8.5, 129 embryos.

conclusionsBased on the results from the current comparative microarray study, and taking into consideration a number of relevant published reports, several potential strain-specific gene candidates, likely to modify the craniofacial phenotypes in various knockout mouse models have been identified.

Indexed as

Gene Expression Regulation, DevelopmentalGenes, ModifierAnimalsCadherinsCleft LipCleft PalateGene Expression ProfilingMiceMice, Inbred C57BLMice, KnockoutNeural Tube DefectsOligonucleotide Array Sequence AnalysisPhenotypeProto-Oncogene ProteinsReal-Time Polymerase Chain ReactionSpecies SpecificityCadherinsCELSR1 cadherin, humanProto-Oncogene Proteins

Identifiers

PMID22371338
PMCPMC3302963
OpenAlexW1971331045

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.