Evidence map›Paper›PMID 22369936›Full record

ArticleGlycobiology2012

The glycan-binding properties of the cation-independent mannose 6-phosphate receptor are evolutionary conserved in vertebrates.

Alicia C Castonguay, Yi Lasanajak, Xuezheng Song, Linda J Olson, Richard D Cummings, David F Smith, Nancy M Dahms

Open access · bronzeAbstract read
In one paragraph

Article in Glycobiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Chemistry of natural glycan microarrays.Current opinion in chemical biology · 2014
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Alicia C CastonguayDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA.
Yi Lasanajak
Xuezheng Song
Linda J Olson
Richard D Cummings
David F Smith
Nancy M Dahms
Emory University · USMedical College of Wisconsin · US

Funding

STRUCTURAL ANALYSIS OF THE MANNOSE 6-PHOSPHATE RECEPTORSR01DK042667 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI DAHMS, NANCY M. · 1997 to 2023
$9.8M
Shotgun Glycomics: Linking Glycan Structure and FunctionR01GM085448 · NIGMS · EMORY UNIVERSITY · PI SMITH, DAVID FLETCHER · 2008 to 2011
$2.3M
Structural Analysis of the Mannose 6-Phosphate ReceptorsR56DK042667 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI DAHMS, NANCY M. · 2010 to 2010
$228k
STRUCTURAL ANALYSIS OF THE MANNOSE 6-PHOSPHATE RECEPTORSR29DK042667 · NIDDK · MEDICAL COLLEGE OF WISCONSIN · PI DAHMS, NANCY M. · 1992 to 1996
–
NIDDK NIH HHS DK042667NIDDK NIH HHS R01 DK042667NIDDK NIH HHS R56 DK042667NIGMS NIH HHS GM085448NIGMS NIH HHS R01 GM085448
6 · The paper itself

Abstract

The 300-kDa cation-independent mannose 6-phosphate receptor (CI-MPR) plays an essential role in the biogenesis of lysosomes by delivering newly synthesized lysosomal enzymes from the trans Golgi network to the endosomal system. The CI-MPR is expressed in most eukaryotes, with Saccharomyces cerevisiae and Caenorhabditis elegans being notable exceptions. Although the repertoire of glycans recognized by the bovine receptor has been studied extensively, little is known concerning the ligand-binding properties of the CI-MPR from non-mammalian species. To assess the evolutionary conservation of the CI-MPR, surface plasmon resonance analyses using lysosomal enzymes with defined N-glycans were carried out to probe the glycan-binding specificity of the Danio rerio CI-MPR. The results demonstrate that the D. rerio CI-MPR harbors three glycan-binding sites that, like the bovine CI-MPR, map to domains 3, 5 and 9 of its 15-domain-containing extracytoplasmic region. Analyses on a phosphorylated glycan microarray further demonstrated the unique binding properties of each of the three sites and showed that, similar to the bovine CI-MPR, only domain 5 of the D. rerio CI-MPR is capable of recognizing Man-P-GlcNAc-containing glycans.

Indexed as

alpha-GlucosidasesAmino Acid SequenceAnimalsBinding, CompetitiveBinding SitesCarbohydrate ConformationCarbohydrate SequenceCells, CulturedCellulasesConserved SequenceEvolution, MolecularHumansImmobilized ProteinsMolecular Sequence DataPolysaccharidesProtein Array Analysisalpha-GlucosidasesCellulasesGAA protein, humanImmobilized ProteinsPolysaccharidesReceptor, IGF Type 2Sugar PhosphatesZebrafish Proteins

Identifiers

PMID22369936
PMCPMC3355666
OpenAlexW2145629424

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.