Evidence map›Paper›PMID 22368304›Full record

ArticleJournal of the Royal Statistical Society. Series C, Applied statistics2011

Mixture modelling as an exploratory framework for genotype-trait associations.

Kinman Au, Rongheng Lin, Andrea S Foulkes

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the Royal Statistical Society. Series C, Applied statistics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Latent variable modeling paradigms for genotype-trait association studies.Biometrical journal. Biometrische Zeitschrift · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kinman AuUniversity of Massachusetts, Amherst, USA.
Rongheng Lin
Andrea S Foulkes
University of Massachusetts Amherst · US

Funding

WOMEN'S HEALTH AGENDAU01AI038858 · NIAID · SOCIAL AND SCIENTIFIC SYSTEMS, INC. · PI BENSON, CONSTANCE ANN · 1996 to 2008
$157.5M
UMASS MEDICAL CENTER FOR AIDS RESEARCHP30AI042845 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 1998 to 2012
$13.0M
Genetics of atherosclerosis in renal diseaseR01DK071224 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI REILLY, MUREDACH P · 2006 to 2010
$2.9M
Methods for high-dimensional data in HIV/CVD researchR01HL107196 · NHLBI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI FOULKES, ANDREA S · 2011 to 2015
$2.0M
Methods for high-dimensional data in HIV researchR01AI056983 · NIAID · UNIVERSITY OF MASSACHUSETTS AMHERST · PI FOULKES, ANDREA S · 2005 to 2009
$1.5M
NHLBI NIH HHS R01 HL107196NIAID NIH HHS P30 AI042845NIAID NIH HHS R01 AI056983NIAID NIH HHS U01 AI038858NIDDK NIH HHS R01 DK071224
6 · The paper itself

Abstract

We propose a mixture modelling framework for both identifying and exploring the nature of genotype-trait associations. This framework extends the classical mixed effects modelling approach for this setting by incorporating a Gaussian mixture distribution for random genotype effects. The primary advantages of this paradigm over existing approaches include that the mixture modelling framework addresses the degrees-of-freedom challenge that is inherent in application of the usual fixed effects analysis of covariance, relaxes the restrictive single normal distribution assumption of the classical mixed effects models and offers an exploratory framework for discovery of underlying structure across multiple genetic loci. An application to data arising from a study of antiretroviral-associated dyslipidaemia in human immunodeficiency virus infection is presented. Extensive simulations studies are also implemented to investigate the performance of this approach.

Identifiers

PMID22368304
PMCPMC3285383
OpenAlexW1603808707

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.