Evidence map›Paper›PMID 22367405›Full record

ArticleHuman genetics2012

Genetic variant in TP63 on locus 3q28 is associated with risk of lung adenocarcinoma among never-smoking females in Asia.

H Dean Hosgood, Wen-Chang Wang, Yun-Chul Hong, Jiu-Cun Wang, Kexin Chen, I-Shou Chang, Chien-Jen Chen, Daru Lu, Zhihua Yin, Chen Wu and 74 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Human genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02611570 (Low Dose Computed Tomography Screening Study in Non-smokers with Risk Factors for Lung Cancer in Taiwan), which is not on this map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02611570 active not recruitingnot on this mapstarted 2014, after this paper: background citation

Low Dose Computed Tomography Screening Study in Non-smokers with Risk Factors for Lung Cancer in Taiwan

TypeobservationalSponsorAcademia Sinica, TaiwanRan2014 to 2028Enrolled12,000ConditionsLung CancerArmsLDCT
3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 42 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  6. Review
  7. Polymorphism in theAfrican health sciences · 2021
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  12. Secular trends in incidence of lung cancer by histological type in Beijing, China, 2000Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

84 authors at 20 institutions in 6 countries.

H Dean HosgoodDivision of Cancer Epidemiology and Genetics, National Cancer Institute, 6120 Executive Blvd., EPS 8118, MCS 7240, Bethesda, MD 20892-7240, USA. hosgoodd@mail.nih.gov
Wen-Chang Wang
Yun-Chul Hong
Jiu-Cun Wang
Kexin Chen
I-Shou Chang
Chien-Jen Chen
Daru Lu
Zhihua Yin
Chen Wu
Wei Zheng
Biyun Qian
Jae Yong Park
Yeul Hong Kim
Nilanjan Chatterjee
Ying Chen
Gee-Chen Chang
Chin-Fu Hsiao
Meredith Yeager
Ying-Huang Tsai
Hu Wei
Young Tae Kim
Wei Wu
Zhenhong Zhao
Wong-Ho Chow
Xiaoling Zhu
Yen-Li Lo
Sook Whan Sung
Kuan-Yu Chen
Jeff Yuenger
Joo Hyun Kim
Liming Huang
Ying-Hsiang Chen
Yu-Tang Gao
Jin Hee Kim
Ming-Shyan Huang
Tae Hoon Jung
Neil Caporaso
Xueying Zhao
Zhang Huan
Dianke Yu
Chang Ho Kim
Wu-Chou Su
Xiao-Ou Shu
In-San Kim
Bryan Bassig
Yuh-Min Chen
Sung Ick Cha
Wen Tan
Hongyan Chen
Tsung-Ying Yang
Jae Sook Sung
Chih-Liang Wang
Xuelian Li
Kyong Hwa Park
Chong-Jen Yu
Jeong-Seon Ryu
Yongbing Xiang
Amy Hutchinson
Jun Suk Kim
Qiuyin Cai
Maria Teresa Landi
Kyoung-Mu Lee
Jen-Yu Hung
Ju-Yeon Park
Margaret Tucker
Chien-Chung Lin
Yangwu Ren
Reury-Perng Perng
Chih-Yi Chen
Li Jin
Kun-Chieh Chen
Yao-Jen Li
Yu-Fang Chiu
Fang-Yu Tsai
Pan-Chyr Yang
Joseph F Fraumeni
Adeline Seow
Dongxin Lin
Baosen Zhou
Stephen Chanock
Chao Agnes Hsiung
Nathaniel Rothman
Qing Lan
National Health Research Institutes · TWDivision of Cancer Epidemiology and GeneticsNational Cancer Institute · USChina Medical University · CNKyungpook National University · KRSeoul National University · KRState Key Laboratory of Molecular OncologyTianjin Medical University Cancer Institute and Hospital · CNFudan University · CNKorea University · KRNational Taiwan University Hospital · TWState Key Laboratory of Genetic EngineeringTaichung Veterans General Hospital · TWVanderbilt University · USKorea University · JPNational Cheng Kung University Hospital · TWNational Taiwan University · TWSeoul National University Hospital · KRShanghai Cancer Institute · CNTaipei Veterans General Hospital · TW

Funding

Laboratory of Translational GenomicsZIACP010201 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI PROKUNINA-OLSSON, LIUDMILA · 2010 to 2025
$91.2M
Molecular Epidemiology Studies of Occupational and Environmental ExposuresZIACP010121 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ROTHMAN, NATHANIEL · 2009 to 2025
$23.5M
Cancer Risk Reduction and Diet: A Cohort Study of WomenR37CA070867 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ZHENG, WEI · 2009 to 2013
$4.7M
CANCER RISK REDUCTION AND DIET--A COHORT STUDY OF WOMENR01CA070867 · NCI · VANDERBILT UNIVERSITY · PI ZHENG, WEI · 1996 to 2007
$4.6M
CLINICAL/IMMUNOLOGIC/GENETIC ANALYSES OF AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROMEZ01AI000732 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI RAO, VEMULKONDA · 1995 to 2008
$1.1M
Intramural NIH HHS Z99 CA999999NCI NIH HHS R01 CA070867NCI NIH HHS R37 CA070867NCI NIH HHS Y99 CA999999
6 · The paper itself

Abstract

A recent genome-wide association study (GWAS) of subjects from Japan and South Korea reported a novel association between the TP63 locus on chromosome 3q28 and risk of lung adenocarcinoma (p = 7.3 × 10(-12)); however, this association did not achieve genome-wide significance (p ≤ 10(-7)) among never-smoking males or females. To determine if this association with lung cancer risk is independent of tobacco use, we genotyped the TP63 SNPs reported by the previous GWAS (rs10937405 and rs4488809) in 3,467 never-smoking female lung cancer cases and 3,787 never-smoking female controls from 10 studies conducted in Taiwan, Mainland China, South Korea, and Singapore. Genetic variation in rs10937405 was associated with risk of lung adenocarcinoma [n = 2,529 cases; p = 7.1 × 10(-8); allelic risk = 0.80, 95% confidence interval (CI) = 0.74-0.87]. There was also evidence of association with squamous cell carcinoma of the lung (n = 302 cases; p = 0.037; allelic risk = 0.82, 95% CI = 0.67-0.99). Our findings provide strong evidence that genetic variation in TP63 is associated with the risk of lung adenocarcinoma among Asian females in the absence of tobacco smoking.

Indexed as

AdenocarcinomaAdenocarcinoma of LungAsiaCarcinoma, Squamous CellCase-Control StudiesFemaleGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyGenotypeHumansLung NeoplasmsPolymorphism, Single NucleotideRiskSmokingTranscription FactorsTP63 protein, humanTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID22367405
PMCPMC3875137
OpenAlexW2036148388

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.