Evidence map›Paper›PMID 22367040›Full record

ArticleGenetics2012

Genome scans for transmission ratio distortion regions in mice.

Joaquim Casellas, Rodrigo J Gularte, Charles R Farber, Luis Varona, Margarete Mehrabian, Eric E Schadt, Aldon J Lusis, Alan D Attie, Brian S Yandell, Juan F Medrano

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

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  5. Bypassing Mendel's First Law: Transmission Ratio Distortion in Mammals.International journal of molecular sciences · 2023
    Review
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  14. Whole genome sequencing identifies allelic ratio distortion in sperm involving genes related to spermatogenesis in a swine model.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Joaquim CasellasDepartament de Ciència Animal i dels Aliments, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain.
Rodrigo J Gularte
Charles R Farber
Luis Varona
Margarete Mehrabian
Eric E Schadt
Aldon J Lusis
Alan D Attie
Brian S Yandell
Juan F Medrano
University of California, Davis · USUniversity of California, Los Angeles · USRosetta Stone (United States) · USUniversidad de Zaragoza · ESUniversitat Autònoma de Barcelona · ESUniversity of Virginia · USUniversity of Wisconsin–Madison · US

Funding

The Genetics of Obesity and DiabetesR01DK058037 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D · 2001 to 2013
$5.7M
Positional cloning of obesity genes from congenic miceR01DK069978 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WARDEN, CRAIG H · 2006 to 2010
$1.7M
NIDDK NIH HHS DK69978NIDDK NIH HHS R01 DK058037
6 · The paper itself

Abstract

Transmission ratio distortion (TRD) is the departure from the expected genotypic frequencies under Mendelian inheritance. This departure can be due to multiple physiological mechanisms during gametogenesis, fertilization, fetal and embryonic development, and early neonatal life. Although a few TRD loci have been reported in mouse, inheritance patterns have never been evaluated for TRD. In this article, we developed a Bayesian binomial model accounting for additive and dominant deviation TRD mechanisms. Moreover, this model was used to perform genome-wide scans for TRD quantitative trait loci (QTL) on six F2 mouse crosses involving between 296 and 541 mice and between 72 and 1854 genetic markers. Statistical significance of each model was checked at each genetic marker with Bayes factors. Genome scans revealed overdominance TRD QTL located in mouse chromosomes 1, 2, 12, 13, and 14 and additive TRD QTL in mouse chromosomes 2, 3, and 15, although these results did not replicate across mouse crosses. This research contributes new statistical tools for the analysis of specific genetic patterns involved in TRD in F2 populations, our results suggesting a relevant incidence of TRD phenomena in mouse with important implications for both statistical analyses and biological research.

Indexed as

GenomicsModels, GeneticAnimalsBayes TheoremFemaleGenomeGenotypeInheritance PatternsMaleMiceQuantitative Trait Loci

Identifiers

PMID22367040
PMCPMC3338264
OpenAlexW2119375605

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.