Evidence map›Paper›PMID 22366418›Full record

ArticleJournal of bacteriology2012

A VapBC toxin-antitoxin module is a posttranscriptional regulator of metabolic flux in mycobacteria.

Joanna L McKenzie, Jennifer Robson, Michael Berney, Tony C Smith, Alaine Ruthe, Paul P Gardner, Vickery L Arcus, Gregory M Cook

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
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  8. Toxin-antitoxin system gene mutations drivingFrontiers in microbiology · 2024
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  9. Impact of Genomic Deletion RD16 on the Expression of theCurrent issues in molecular biology · 2023
    Article
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  19. PhoH2 proteins couple RNA helicase and RNAse activities.Protein science : a publication of the Protein Society · 2020
    Review
  20. Towards Exploring Toxin-Antitoxin Systems inInternational journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Joanna L McKenzieDepartment of Biological Sciences, University of Waikato, Hamilton, New Zealand.
Jennifer Robson
Michael Berney
Tony C Smith
Alaine Ruthe
Paul P Gardner
Vickery L Arcus
Gregory M Cook
University of Waikato · NZUniversity of Otago · NZUniversity of Canterbury · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The largest family of toxin-antitoxin (TA) modules are encoded by the vapBC operons, but their roles in bacterial physiology remain enigmatic. Microarray analysis in Mycobacterium smegmatis overexpressing VapC/VapBC revealed a high percentage of downregulated genes with annotated roles in carbon transport and metabolism, suggesting that VapC was targeting specific metabolic mRNA transcripts. To validate this hypothesis, purified VapC was used to identify the RNA cleavage site in vitro. VapC had RNase activity that was sequence specific, cleaving single-stranded RNA substrates at AUAU and AUAA in vitro and in vivo (viz., MSMEG_2121 to MSMEG_2124). A bioinformatic analysis of these regions suggested that an RNA hairpin 3' of the AUA(U/A) motif is also required for efficient cleavage. VapC-mediated regulation in vivo was demonstrated by showing that MSMEG_2124 (dhaF) and MSMEG_2121 (dhaM) were upregulated in a ΔvapBC mutant growing on glycerol. The ΔvapBC mutant had a specific rate of glycerol consumption that was 2.4-fold higher than that of the wild type during exponential growth. This increased rate of glycerol consumption was not used for generating bacterial biomass, suggesting that metabolism by the ΔvapBC mutant was uncoupled from growth. These data suggest a model in which VapC regulates the rate of glycerol utilization to match the anabolic demands of the cell, allowing for fine-tuning of the catabolic rate at a posttranscriptional level.

Indexed as

AntitoxinsBacterial ProteinsBacterial ToxinsBiological TransportCarbonDNA-Binding ProteinsDown-RegulationEnergy MetabolismGene Expression ProfilingGene Expression Regulation, BacterialGene SilencingGlycerolMembrane GlycoproteinsMycobacterium smegmatisProtein Array AnalysisRNA, MessengerAntitoxinsBacterial ProteinsBacterial ToxinsCarbonDNA-Binding ProteinsGlycerolMembrane GlycoproteinsRNA, MessengerVapB protein, Bacteria

Identifiers

PMID22366418
PMCPMC3347065
OpenAlexW1963786669

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.