Evidence map›Paper›PMID 22366317›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Peptide tag forming a rapid covalent bond to a protein, through engineering a bacterial adhesin.

Bijan Zakeri, Jacob O Fierer, Emrah Celik, Emily C Chittock, Ulrich Schwarz-Linek, Vincent T Moy, Mark Howarth

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 782 papers.

0numbers the graph read from it
0cells of the map it votes in
782citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

782 citing papers in PubMed.

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  8. Characterizing dynamics of productive dynein stepping by MINFLUX.Nature structural & molecular biology · 2026
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722 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bijan ZakeriDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.
Jacob O Fierer
Emrah Celik
Emily C Chittock
Ulrich Schwarz-Linek
Vincent T Moy
Mark Howarth

Funding

Wellcome Trust 091911
6 · The paper itself

Abstract

Protein interactions with peptides generally have low thermodynamic and mechanical stability. Streptococcus pyogenes fibronectin-binding protein FbaB contains a domain with a spontaneous isopeptide bond between Lys and Asp. By splitting this domain and rational engineering of the fragments, we obtained a peptide (SpyTag) which formed an amide bond to its protein partner (SpyCatcher) in minutes. Reaction occurred in high yield simply upon mixing and amidst diverse conditions of pH, temperature, and buffer. SpyTag could be fused at either terminus or internally and reacted specifically at the mammalian cell surface. Peptide binding was not reversed by boiling or competing peptide. Single-molecule dynamic force spectroscopy showed that SpyTag did not separate from SpyCatcher until the force exceeded 1 nN, where covalent bonds snap. The robust reaction conditions and irreversible linkage of SpyTag shed light on spontaneous isopeptide bond formation and should provide a targetable lock in cells and a stable module for new protein architectures.

Indexed as

Adhesins, BacterialAmidesBiophysicsCell MembraneFibronectinsHeLa CellsHumansHydrogen-Ion ConcentrationMicroscopy, Atomic ForceMolecular Sequence DataPeptidesProtein BindingProtein EngineeringProtein Structure, TertiarySpectrometry, Mass, Electrospray IonizationStreptococcus pyogenesAdhesins, BacterialAmidesFibronectinsPeptides

Identifiers

PMID22366317
PMCPMC3311370

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.