Evidence map›Paper›PMID 22365328›Full record

ArticleVirology2012

MuLV IN mutants responsive to HDAC inhibitors enhance transcription from unintegrated retroviral DNA.

William M Schneider, Dai-tze Wu, Vaibhav Amin, Sriram Aiyer, Monica J Roth

Abstract read
In one paragraph

Article in Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  9. Unintegrated HIV-1 DNAs are loaded with core and linker histones and transcriptionally silenced.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

William M SchneiderUniversity of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA. wschneider@rockefeller.edu
Dai-tze Wu
Vaibhav Amin
Sriram Aiyer
Monica J Roth
Johnson University · US

Funding

Integration of Murine Retroviral VectorsR01GM070837 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ROTH, MONICA J. · 2005 to 2013
$2.1M
Retroviral Integration & HDAC inhibitorsR01GM088808 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ROTH, MONICA J. · 2009 to 2012
$1.3M
GRADUATE TRAINING IN CELLULAR AND MOLECULAR BIOLOGYT32GM008360 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI MADURA, KIRAN · 1991 to 2011
$1.1M
NIGMS NIH HHS R01 GM070837NIGMS NIH HHS R01 GM088808NIGMS NIH HHS T32 GM008360NIGMS NIH HHS T32 GM08360PHS HHS T32 A1007403
6 · The paper itself

Abstract

For Moloney murine leukemia virus (M-MuLV), sustained viral infections require expression from an integrated provirus. For many applications, non-integrating retroviral vectors have been utilized to avoid the unwanted effects of integration, however, the level of expression from unintegrated DNA is significantly less than that of integrated provirus. We find that unintegrated DNA expression can be increased in the presence of HDAC inhibitors, such as TSA, when applied in combination with integrase (IN) mutations. These mutants include an active site mutation as well as catalytically active INs bearing mutations of K376 in the MuLV C-terminal domain of IN. MuLV IN K376 is homologous to K266 in HIV-1 IN, a known substrate for acetylation. The MuLV IN protein is acetylated by p300 in vitro, however, the effect of HDAC inhibitors on gene expression from unintegrated DNA is not dependent on the acetylation state of MuLV IN K376.

Indexed as

Amino Acid SequenceAnimalsCell LineDNA, ViralDogsGene Expression Regulation, ViralHistone Deacetylase InhibitorsHumansIntegrasesMiceMolecular Sequence DataMoloney murine leukemia virusRetroviridae InfectionsSequence AlignmentTranscription, GeneticUp-RegulationDNA, ViralHistone Deacetylase InhibitorsIntegrasesViral Proteins

Identifiers

PMID22365328
PMCPMC3294019
OpenAlexW1964106615

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.