Evidence map›Paper›PMID 22364185›Full record

ArticleAIDS research and human retroviruses2012

Recombination between variants from genital tract and plasma: evolution of multidrug-resistant HIV type 1.

Kimdar S Kemal, Christina M Ramirez, Harold Burger, Brian Foley, Douglas Mayers, Thomas Klimkait, François Hamy, Kathryn Anastos, Katarina Petrovic, Vladimir N Minin and 2 more

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Human enterovirus 71 epidemics: what's next?Emerging health threats journal · 2013
    Review
  4. Molecular epidemiology of HIV type 1 subtypes in Rwanda.AIDS research and human retroviruses · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Kimdar S KemalWadsworth Center, New York State Department of Health, Albany, NY, USA.
Christina M Ramirez
Harold Burger
Brian Foley
Douglas Mayers
Thomas Klimkait
François Hamy
Kathryn Anastos
Katarina Petrovic
Vladimir N Minin
Marc A Suchard
Barbara Weiser
University of California, Los Angeles · USWadsworth Center · USIdera Pharmaceuticals (United States) · USLos Alamos National Laboratory · USMontefiore Medical Center · USNew York State Department of Health · USUniversity of Washington · US

Funding

Women's Interagency HIV Study (WIHS-V)U01AI035004 · NIAID · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI ANASTOS, KATHRYN M., SHARMA, ANJALI · 1993 to 2018
$65.7M
HIV Compartmentalization in Women:Virus &CTL ResponseR01AI052015 · NIAID · WADSWORTH CENTER · PI WEISER, BARBARA · 2002 to 2006
$2.0M
Bayesian Joint Estimation of Alignment and PhylogenyR01GM086887 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SUCHARD, MARC A. · 2008 to 2012
$1.5M
NIAID NIH HHS R01AI52015NIAID NIH HHS U01 AI035004NIAID NIH HHS U01AI/DE35004NIGMS NIH HHS R01GM086887
6 · The paper itself

Abstract

Multidrug-resistant (MDR) HIV-1 presents a challenge to the efficacy of antiretroviral therapy (ART). To examine mechanisms leading to MDR variants in infected individuals, we studied recombination between single viral genomes from the genital tract and plasma of a woman initiating ART. We determined HIV-1 RNA sequences and drug resistance profiles of 159 unique viral variants obtained before ART and semiannually for 4 years thereafter. Soon after initiating zidovudine, lamivudine, and nevirapine, resistant variants and intrapatient HIV-1 recombinants were detected in both compartments; the recombinants had inherited genetic material from both genital and plasma-derived viruses. Twenty-three unique recombinants were documented during 4 years of therapy, comprising ~22% of variants. Most recombinant genomes displayed similar breakpoints and clustered phylogenetically, suggesting evolution from common ancestors. Longitudinal analysis demonstrated that MDR recombinants were common and persistent, demonstrating that recombination, in addition to point mutation, can contribute to the evolution of MDR HIV-1 in viremic individuals.

Indexed as

Recombination, GeneticAdultAnti-HIV AgentsFemaleGenitalia, FemaleHIV-1HIV InfectionsHumansLamivudineMolecular Sequence DataNevirapinePlasmaRNA, ViralSequence Analysis, DNAZidovudineAnti-HIV AgentsLamivudineNevirapineRNA, ViralZidovudine

Identifiers

PMID22364185
PMCPMC3505048
OpenAlexW2039338025

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.